PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_11360V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bZIP
Protein Properties Length: 278aa    MW: 29759.8 Da    PI: 7.1836
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_11360V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.91e-13196258163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        +ke kr +r+ +NR++A+  R+RKka++ eLe ++keLe  N +L +++++l+ e + l++ v
  Pp3c7_11360V3.1.p 196 DKEHKRLKRLLRNRVSAQQARERKKAYLSELEIRSKELEHRNAELEERVSTLQRENQMLRQIV 258
                        5899*****************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-16194259No hitNo description
SMARTSM003383.5E-15196260IPR004827Basic-leucine zipper domain
PfamPF001704.2E-13197258IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.381198261IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.19E-12200258No hitNo description
CDDcd147042.74E-23201252No hitNo description
PROSITE patternPS000360203218IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTDFDETQGD SKVHCEADSE ADHPSDCYSS ESGDETDAEV PDVTDPLACG SNLLQGAGNG  60
KRFPKLTSVV GNNSSVANSS RRGFREGVDI GRNWKPVNFG EHQGLEGILP MQVSSVGPGS  120
SPASSKQQTG TDMSVSPPLA NAAVDKLMKD GNESDCDVRR VPELSAKTGG GVAGSHTQEK  180
GPTGSSHRKR GGASADKEHK RLKRLLRNRV SAQQARERKK AYLSELEIRS KELEHRNAEL  240
EERVSTLQRE NQMLRQIVKT TALKKTYSGG NAEGGAQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.170630.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381386.10.0transcription factor HY5-like
TrEMBLA0A2K1KBC60.0A0A2K1KBC6_PHYPA; Uncharacterized protein
STRINGPP1S87_156V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-39bZIP family protein