PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c6_22390V3.2.p

Common Name

PHYPADRAFT_82495

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

BES1

Protein Properties

Length: 504aa MW: 54957 Da PI: 7.37

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c6_22390V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	156.4	2.1e-48	49	158	4	114
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 r+p+++ErEnnkrRERrRRaiaaki+aGLRa+Gny+lpk+aD neVlkALc+eAGw ve+DGt +rkgs+p+ + e++ + ++ + + s++ Pp3c6_22390V3.2.p 49 LRMPSARERENNKRRERRRRAIAAKIFAGLRAHGNYCLPKHADHNEVLKALCQEAGWQVEEDGTIFRKGSQPP-SREVTTAHNTPEGTPSYE 139 69***********************************************************************.666666667777777777 PP DUF822 96 sslkssalaspvesysasp 114 s ks + +s s++ ++ Pp3c6_22390V3.2.p 140 RSFKSDTSPSTSCSQAGQT 158 7777766666555544333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.1E-43	50	158	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MQVGDRSFEQ GESSEVRKCT VRGCIKSTSG PWIVRRPPGK GQSTAPAVLR MPSARERENN 60 KRRERRRRAI AAKIFAGLRA HGNYCLPKHA DHNEVLKALC QEAGWQVEED GTIFRKGSQP 120 PSREVTTAHN TPEGTPSYER SFKSDTSPST SCSQAGQTSD EPTCTARSGG AEVRHLGRIS 180 VDSQFEDKRQ RCDPLSNFKT VVAFPSAVQA RNPNPNSRDP KNRAGPKSVA GFLLPEQTVR 240 LHHVGNLNDP PVPGAEDIAE VCTALAVKNE WETTQGTAGV LYSGGQTVGQ TYIVSCASEK 300 DTSGHDRFSH DPLVADMMDC VDLGQQLECG RRKRFLEHQS KQLEYDQLNP YLNVHMNGDS 360 SVVSQVQRQT QDPDPGKHYT LFPEAADLLN QSQREQGDQY SCITHEMVDV TGQAYKSLKD 420 GLCLWSGRDG ASVSTGSTRL SLHPAAAAAS TTASNRGGAS IISLQHKKVD ADEDIVKDIA 480 DDLTLTLCTS VRHTHTPESS RVV*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MQVGDRSFEQ GESSEVRKCT VRGCIKSTSG PWIVRRPPGK GQSTAPAVLR MPSARERENN  60
KRRERRRRAI AAKIFAGLRA HGNYCLPKHA DHNEVLKALC QEAGWQVEED GTIFRKGSQP  120
PSREVTTAHN TPEGTPSYER SFKSDTSPST SCSQAGQTSD EPTCTARSGG AEVRHLGRIS  180
VDSQFEDKRQ RCDPLSNFKT VVAFPSAVQA RNPNPNSRDP KNRAGPKSVA GFLLPEQTVR  240
LHHVGNLNDP PVPGAEDIAE VCTALAVKNE WETTQGTAGV LYSGGQTVGQ TYIVSCASEK  300
DTSGHDRFSH DPLVADMMDC VDLGQQLECG RRKRFLEHQS KQLEYDQLNP YLNVHMNGDS  360
SVVSQVQRQT QDPDPGKHYT LFPEAADLLN QSQREQGDQY SCITHEMVDV TGQAYKSLKD  420
GLCLWSGRDG ASVSTGSTRL SLHPAAAAAS TTASNRGGAS IISLQHKKVD ADEDIVKDIA  480
DDLTLTLCTS VRHTHTPESS RVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-17	50	125	372	447	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-17	50	125	372	447	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-17	50	125	372	447	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-17	50	125	372	447	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024377600.1	0.0	uncharacterized protein LOC112283296
TrEMBL	A0A2K1KGP4	0.0	A0A2K1KGP4_PHYPA; Uncharacterized protein
STRING	PP1S103_145V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36780.1	7e-19	BES1/BZR1 homolog 2

Link Out ? help Back to Top
Phytozome	Pp3c6_22390V3.2.p
Entrez Gene	5931734

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]