PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_19350V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 360aa    MW: 39233.2 Da    PI: 5.751
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_19350V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-2061111155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GVr +  +g+Wv+eIr+p   +kr r++lg+f tae+Aa+a++aa ++l+g
  Pp3c6_19350V3.2.p  61 SKYRGVRMRA-WGKWVSEIREP---NKRSRIWLGSFPTAEMAARAYDAAVLCLRG 111
                        89*****998.**********9...336*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-1361111IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2261121IPR016177DNA-binding domain
CDDcd000187.80E-3561121No hitNo description
PROSITE profilePS5103223.69662119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3262121IPR001471AP2/ERF domain
SMARTSM003804.6E-4062125IPR001471AP2/ERF domain
PRINTSPR003677.9E-106374IPR001471AP2/ERF domain
PRINTSPR003677.9E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVEKQRIITT TPGYHRGIEF LKPRKKKLKR MSSKKPTDEL QAGSSSASDQ KSFEAVALPV  60
SKYRGVRMRA WGKWVSEIRE PNKRSRIWLG SFPTAEMAAR AYDAAVLCLR GPKATLNFPD  120
SPPSSLPLCP SPREIQAVAA AAAAATPTSL ANTHTDATAV SLRANLDRSE HIANDPPRST  180
PQSPTKDPSK ESGSLQQSSG EELLKVLTDT PMLASNLTYE SREGGLDPVV QSRVLGQGDS  240
SGYSTTGAPV IVEHCRECCE ECRKMITQQE RQSSNRPVLA EDSVHPEAPN VDGPLKIEEV  300
EELMVRQQED VQSLLHGLKE IYLPMSPNIE EIIIVPSGAA EGAGDSDFWE FDNLWGFPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1655119772Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12334RKKKLKRMSSKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377709.10.0uncharacterized protein LOC112283351
TrEMBLA0A2K1KGA60.0A0A2K1KGA6_PHYPA; Uncharacterized protein
STRINGPP1S14_196V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-26ERF family protein