PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c6_16660V3.1.p | ||||||||
Common Name | PHYPADRAFT_195459 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22365.5 Da PI: 4.7411 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3e-16 | 13 | 59 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51 s+y+GVr ++ +g+Wv+eIrdp kr++lg+f t+ eAa a +aa++ Pp3c6_16660V3.1.p 13 SQYRGVRMRR-WGKWVSEIRDP-----ImkKRIWLGSFRTEAEAAHAFDAAAL 59 78*****998.**********7.....447**********99*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.48E-16 | 13 | 73 | No hit | No description |
Pfam | PF00847 | 4.4E-9 | 13 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 13 | 73 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-25 | 14 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.704 | 14 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-27 | 14 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-9 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-9 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSERNRRSDT SSSQYRGVRM RRWGKWVSEI RDPIMKKRIW LGSFRTEAEA AHAFDAAALM 60 CLRNPMSQLN FPHYSYIIPS GSAGCFSTRE IQAAAAATAA ASAGRSFSYN GFTQSSTSAS 120 SDSDDAQEIE DITYDEHQRY THPSVPSYSC SSYARSWSNF DEDIDLVSEM ARGMLMQPPA 180 PDDDDDGDYN YPGPLYLWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 1 | 81 | 1 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7026 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024377594.1 | 1e-147 | ethylene-responsive transcription factor ERF017-like | ||||
TrEMBL | A9TIU0 | 1e-145 | A9TIU0_PHYPA; Predicted protein | ||||
STRING | PP1S240_84V6.1 | 1e-146 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 3e-16 | related to AP2 9 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c6_16660V3.1.p |
Entrez Gene | 5941686 |
Publications ? help Back to Top | |||
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