PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_14470V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 338aa    MW: 37235.7 Da    PI: 6.5104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_14470V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.52e-21144202259
                        --SS-.EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgyn.WrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++ W+KYG K++++s++ r+YY+C+ ++C++kk v+ +++dp+v+e+tY ++H+++
  Pp3c6_14470V3.2.p 144 DDGHRgWKKYGNKSIQNSNHCRGYYKCSVKECRAKKMVQPTDTDPTVFEVTYVEKHTCS 202
                        688866***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-23138203IPR003657WRKY domain
PROSITE profilePS5081116.317138204IPR003657WRKY domain
SuperFamilySSF1182904.18E-20142202IPR003657WRKY domain
SMARTSM007743.7E-22143203IPR003657WRKY domain
PfamPF031063.0E-19144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEQDQLCWYD AGEDSSSQQR QKPQQGQKFS RLPVSMQVDH SEWPMLAETG WAMDSTSLPP  60
PLPSDPRQCS SSFQISNGGM SSTFSGDKNQ SVPEEQSYIN KAPLRANRAR NNGGKSDVRK  120
LSGNETKVEV VLQKLNDAKK GIPDDGHRGW KKYGNKSIQN SNHCRGYYKC SVKECRAKKM  180
VQPTDTDPTV FEVTYVEKHT CSSTAQRRNR STRVPAGSAA HAGPSQGKDK SAEANDDEQA  240
TFQGAIQGAA SCKRGRENES DNHSYLNNMD TSTTTTASEE EREQVMGDGD APMETYLHQS  300
TRHHQSAYGL DPLIWPFEME ASLSSGHKSV SMDSDSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024377829.10.0probable WRKY transcription factor 65 isoform X2
TrEMBLA0A2K1KFK10.0A0A2K1KFK1_PHYPA; Uncharacterized protein
STRINGPP1S195_75V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-15WRKY DNA-binding protein 46