PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_13660V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 613aa    MW: 64538 Da    PI: 6.9019
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_13660V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.7e-09232252526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++f++ G C++Gd C FaHg
  Pp3c6_13660V3.2.p 232 ACPDFRK-GSCRRGDACEFAHG 252
                        7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.3E-6227253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807228254IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7232252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5232254IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085262286IPR000571Zinc finger, CCCH-type
SMARTSM0035611262285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MSGGAGGLAS LDGGGSSSLS LYESMVDYVP MSQHVQAQHA MRRLNSFSPA AMHDAEAPVD  60
GASGGVYQRS HSFGGGGSAG LHAFNNFFSS PPSSPVSRGE FSGFSMADEE SLIEAGSGKG  120
GFFEEAGKGA GRADLRGLSL GPASPLGAGG SSMGSPTFSD ALFNKFLPSN NEDEEAWPVV  180
DMYGCDQFRM FEFKVRRCMR GRSHDWTECP FAHPGEKARR RDPRRYHYSG TACPDFRKGS  240
CRRGDACEFA HGVFECWLHP ARYRTQPCKD GRNCRRRVCF FAHTPEQLRL LPAAAQAATT  300
GGRSGGGYDG SPRAGAAASY DGAFGYESLS YDGASGVHGL SHLSGYSSSA HSGAGCVASQ  360
NSSPRSTLVG HAQYPPPLSP PLSPSGSPPP SPGSAEEWGA NAGSFASGSM SGAQSGMSLQ  420
ATLQQAAQAR GLGGHGQTSA VPAHRRHLDR LNSMPTLSIP SAGEHRGLHS GMHPGSAPTS  480
PAGVPQKSMM ELIATLQQLE IRGAPPASAA QWLQQQYTTG PSPLRRCSQS VPGTPTKVSG  540
RWDQKERWEV EENEDGEPAV QRVESGRDLR AKIYGRLSRS SLNEAGSGVG DSPDLDWVND  600
LVEEEPEHSA GW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300306GGRSGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378736.10.0zinc finger CCCH domain-containing protein 35-like
RefseqXP_024378891.10.0zinc finger CCCH domain-containing protein 35-like isoform X1
TrEMBLA0A2K1KFH90.0A0A2K1KFH9_PHYPA; Uncharacterized protein
STRINGPP1S177_93V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.15e-72C3H family protein