PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c6_11070V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 481aa MW: 53120.4 Da PI: 6.5828 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 348.7 | 2.5e-107 | 198 | 415 | 4 | 217 |
VOZ 4 saflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 +a+l pkcalwdc+rp++g ++ + ycssfh++la+ eg+pg+ pv+rp+gidlkdg+lfaal a+v g+ vgipe +gaat+kspwna++l Pp3c6_11070V3.3.p 198 AAYLHPKCALWDCPRPCRGGNEGTFYCSSFHEELAITEGAPGMCPVVRPGGIDLKDGPLFAALAARVGGHAVGIPELQGAATSKSPWNATDL 289 89****************************************************************************************** PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlel 187 fd+++ get+rewlffdkprrafesg rkqrslpdy grgwhesrkq+mk++gglkrsyymdpqp + ewh+yeye+ + ++alyrlel Pp3c6_11070V3.3.p 290 FDVAVHPGETLREWLFFDKPRRAFESGTRKQRSLPDYGGRGWHESRKQIMKDLGGLKRSYYMDPQPEGLNEWHMYEYEVIACTDCALYRLEL 381 ******************************************************************************************** PP VOZ 188 klvde.kksakgk...vskdsladlqkklgrlta 217 k+vd+ k+s k k + +s+a lq+++grl+a Pp3c6_11070V3.3.p 382 KVVDAsKRSGKVKaqaQTDSSVASLQHQIGRLSA 415 ***963667777722224568***********97 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 481 aa Download sequence Send to blast |
MHKDMAMKQK PSRSSQHFRA KANNRVDDLQ CMVSDLQQAR REGRLKDVSM LEEQMHQMLR 60 EWKAELREAS PTSSLLQVAS PCNSELSSDM ERLLQLHDED DDATSKAAPM PEMDDQQPYN 120 HDHPNNSSSH HHQETTVLEA FARIEQSLQE DIQSTSQVAA SSGGHDGIVQ PSTMPQHNPV 180 VHTMSDHFSM SAMVSPLAAY LHPKCALWDC PRPCRGGNEG TFYCSSFHEE LAITEGAPGM 240 CPVVRPGGID LKDGPLFAAL AARVGGHAVG IPELQGAATS KSPWNATDLF DVAVHPGETL 300 REWLFFDKPR RAFESGTRKQ RSLPDYGGRG WHESRKQIMK DLGGLKRSYY MDPQPEGLNE 360 WHMYEYEVIA CTDCALYRLE LKVVDASKRS GKVKAQAQTD SSVASLQHQI GRLSADLSQF 420 ESQNHVLGNV GDGRDSNRGR GRASQKRGLI KSPGPGPLVS ALSGSSSREH TPFNYTAELP 480 * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.6266 | 0.0 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB164647 | 0.0 | AB164647.1 Physcomitrella patens PpVOZ1 mRNA for one zinc finger protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024378751.1 | 0.0 | transcription factor VOZ1-like isoform X2 | ||||
Swissprot | Q9SGQ0 | 1e-139 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2K1KF99 | 0.0 | A0A2K1KF99_PHYPA; Uncharacterized protein | ||||
STRING | PP1S113_68V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-139 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c6_11070V3.3.p |
Publications ? help Back to Top | |||
---|---|---|---|
|