PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_29220V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 302aa    MW: 34250.6 Da    PI: 8.1091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_29220V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.2e-13247295247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        ++W+ eE ell+++v+++G+g+Wk+I +       gRt+ ++k++w+++
  Pp3c5_29220V3.2.p 247 KKWSNEEVELLKRGVQEHGKGHWKKILNDNAdafRGRTEVDLKDKWRNL 295
                        58***************************999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575133No hitNo description
PROSITE profilePS5129413.106241300IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-14242295IPR009057Homeodomain-like
SuperFamilySSF466899.72E-15243296IPR009057Homeodomain-like
SMARTSM007175.1E-9245298IPR001005SANT/Myb domain
PfamPF002492.0E-10247295IPR001005SANT/Myb domain
CDDcd116601.56E-19247297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNLEHWRPRL GFYWVHSFWK NLQHPLLLGS GACEPNLRRF EQLEGALRAS QSELQNILDV  60
KIAEVKRSVV VLEDAHHSLK KLVKDQAEVC KQHVRLKNPG TTSQCLGLSV FNLRPLAHAP  120
GLEDDNMYED KERPSSNAHC SQLSSEYPHP SNSQDPYSSP SHPLLLDPGL HNTKETARAL  180
ESSSSPSKIT SRVGFMHGGQ REKRPFQEID LCGEVLICNS EQTVRECKHG ESLLGIGSGS  240
TQRQTQKKWS NEEVELLKRG VQEHGKGHWK KILNDNADAF RGRTEVDLKD KWRNLEKYER  300
L*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KLH70.0A0A2K1KLH7_PHYPA; Uncharacterized protein
STRINGPP1S176_5V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.25e-12MYB_related family protein