PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_29220V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 392aa    MW: 44251.1 Da    PI: 7.4398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_29220V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-13337385247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        ++W+ eE ell+++v+++G+g+Wk+I +       gRt+ ++k++w+++
  Pp3c5_29220V3.1.p 337 KKWSNEEVELLKRGVQEHGKGHWKKILNDNAdafRGRTEVDLKDKWRNL 385
                        58***************************999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.106331390IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-14332385IPR009057Homeodomain-like
SuperFamilySSF466891.5E-14333386IPR009057Homeodomain-like
SMARTSM007175.1E-9335388IPR001005SANT/Myb domain
CDDcd116602.35E-19337387No hitNo description
PfamPF002493.0E-10337385IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MERTPRGGKE LGFKLIHAWI WEYELTKLLS FPTGVLRLRQ MLLIRDLTQQ LGDPISNEID  60
VIRDEFRALA AKAWILLGPL ILEEFAASTI AGKRSLRAQS SVRSPHPVAI LDSEDRSFHD  120
TQEILVDRRF EQLEGALRAS QSELQNILDV KIAEVKRSVV VLEDAHHSLK KLVKDQAEVC  180
KQHVRLKNPG TTSQCLGLSV FNLRPLAHAP GLEDDNMYED KERPSSNAHC SQLSSEYPHP  240
SNSQDPYSSP SHPLLLDPGL HNTKETARAL ESSSSPSKIT SRVGFMHGGQ REKRPFQEID  300
LCGEVLICNS EQTVRECKHG ESLLGIGSGS TQRQTQKKWS NEEVELLKRG VQEHGKGHWK  360
KILNDNADAF RGRTEVDLKD KWRNLEKYER L*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KLH70.0A0A2K1KLH7_PHYPA; Uncharacterized protein
STRINGPP1S471_2V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-12MYB_related family protein