PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_28890V3.5.p

Common Name

PHYPADRAFT_170065

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 434aa MW: 48282.7 Da PI: 7.167

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_28890V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.3	1.7e-12	170	263	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W+++ + +L++a e+ ++l rg+ + W++v++++ + ++++qC+ k +nl+kryk ++e ++ +s++ ++d Pp3c5_28890V3.5.p 170 EWSESATVVLLQAFGEKYRALDRGNFTSKIWADVAARVnsrgsltgnVVDRIPKTQEQCRIKVDNLKKRYKVEREKRRVS-GSGTSKWIFYD 260 5***********************************9999988776777889***************9999976.555669*** PP trihelix 84 qle 86 ++ Pp3c5_28890V3.5.p 261 MMD 263 998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.8E-18	170	265	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MMLRRPGDGW GAGSMSAMPC DDHLHVMGAR MDLASQVQGL RMLQGQQEHE QQRILYQEKG 60 IGLHVHDDHL GKGQHPAHVV VYGHRADENP HNHAPHAYGV VEMGSIKHDV IDDMDAKLEG 120 LSAAMLRVDP KMEDCERPMS EGDVGLANNP QVGLQVGRLR GRSSRDPSIE WSESATVVLL 180 QAFGEKYRAL DRGNFTSKIW ADVAARVNSR GSLTGNVVDR IPKTQEQCRI KVDNLKKRYK 240 VEREKRRVSG SGTSKWIFYD MMDKLIGANL RQTRGGGGLG VDDSPVGLES GDTPLGIRSS 300 EGEGDRMYYL LNASGEANQT SDAIKHKISS IHGRRKRERT LEDLEQEHVN APALMALFEG 360 YNVPPSIIDA MLQEDMDEYT LINSRDMTVL LDQLRSKHRL HIKLGPAERI KQAIEAAKEK 420 KNCLALVIQQ QQL*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MMLRRPGDGW GAGSMSAMPC DDHLHVMGAR MDLASQVQGL RMLQGQQEHE QQRILYQEKG  60
IGLHVHDDHL GKGQHPAHVV VYGHRADENP HNHAPHAYGV VEMGSIKHDV IDDMDAKLEG  120
LSAAMLRVDP KMEDCERPMS EGDVGLANNP QVGLQVGRLR GRSSRDPSIE WSESATVVLL  180
QAFGEKYRAL DRGNFTSKIW ADVAARVNSR GSLTGNVVDR IPKTQEQCRI KVDNLKKRYK  240
VEREKRRVSG SGTSKWIFYD MMDKLIGANL RQTRGGGGLG VDDSPVGLES GDTPLGIRSS  300
EGEGDRMYYL LNASGEANQT SDAIKHKISS IHGRRKRERT LEDLEQEHVN APALMALFEG  360
YNVPPSIIDA MLQEDMDEYT LINSRDMTVL LDQLRSKHRL HIKLGPAERI KQAIEAAKEK  420
KNCLALVIQQ QQL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3163	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376442.1	0.0	uncharacterized protein LOC112282700
Refseq	XP_024376444.1	0.0	uncharacterized protein LOC112282700
TrEMBL	A0A2K1KLF9	0.0	A0A2K1KLF9_PHYPA; Uncharacterized protein
STRING	PP1S229_60V6.2	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	6e-18	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pp3c5_28890V3.5.p
Entrez Gene	5941152

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]