PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_27150V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 340aa MW: 38155.6 Da PI: 4.3438 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 84 | 137 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Pp3c5_27150V3.3.p 84 KKRRLTFDQVRSLEKNFEIENKLEPERKLQLAQELGLQPRQVAVWFQNRRARWK 137 45578999*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.7 | 1.5e-38 | 83 | 174 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE++Fe e+kLeperK +la+eLglqprqvavWFqnrRAR+ktkqlE+dye+L y++lk++ + + +e+++L+ee++ Pp3c5_27150V3.3.p 83 EKKRRLTFDQVRSLEKNFEIENKLEPERKLQLAQELGLQPRQVAVWFQNRRARWKTKQLERDYEVLSLDYNQLKNKFDDVVQEKQQLQEEMD 174 69*************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-19 | 71 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 79 | 139 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-15 | 82 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.29E-16 | 84 | 140 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 84 | 137 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 86 | 146 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.4E-6 | 110 | 119 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 114 | 137 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.4E-6 | 119 | 135 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.6E-14 | 139 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MASTVSGYGG PNVMLVRNES STDTLVAMLA SCSSVQLQVQ LAGGGLEDAV ASCSQKRPYY 60 SSFEASGEDP GDEEIEDCTQ QVEKKRRLTF DQVRSLEKNF EIENKLEPER KLQLAQELGL 120 QPRQVAVWFQ NRRARWKTKQ LERDYEVLSL DYNQLKNKFD DVVQEKQQLQ EEMDCLRGKL 180 PTPQPSSVLG AKEQSKKLKT ASQPSPPKMS EASVKLEQIC TEHTASYDAL VPFLEGDSSF 240 ESSDSMSSEI VNADSPRTSD SISLVPLNEF TTYPHIPTDS MVDSSIIHMS DSICDQMLSP 300 IDCHRISVKL EDGSFQDESC NYMLSQLDEE RGLPWWDWP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 139 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15302 | 0.0 | gametophore |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024374920.1 | 0.0 | homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
TrEMBL | A0A2K1KL89 | 0.0 | A0A2K1KL89_PHYPA; Uncharacterized protein | ||||
STRING | PP1S154_145V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-41 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_27150V3.3.p |