PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_25680V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 356aa MW: 39268.9 Da PI: 7.8717 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 7 | 28 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ff+ G C G C+F+H Pp3c5_25680V3.2.p 7 RVLCKFFMH-GACLKGVDCQFSH 28 78***8888.************* PP | |||||||
2 | zf-CCCH | 24.4 | 4.9e-08 | 37 | 57 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ Pp3c5_25680V3.2.p 37 VCTFYQR-GLCSYGARCRYEHV 57 69*9999.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.723 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 5 | 30 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 5 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 9 | 32 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.765 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-4 | 36 | 56 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 37 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.878 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-4 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 9.3E-10 | 190 | 268 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.24E-10 | 192 | 270 | No hit | No description |
CDD | cd00162 | 5.18E-4 | 205 | 267 | No hit | No description |
SMART | SM00184 | 3.0E-6 | 206 | 263 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 3.4E-5 | 206 | 263 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 11.634 | 206 | 264 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 230 | 239 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 12.859 | 293 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.1 | 293 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MMEGRSRVLC KFFMHGACLK GVDCQFSHNW SDQSSQVCTF YQRGLCSYGA RCRYEHVKVS 60 RLTQPLATPV PVPRHLPAAI SLTSTVDSSS RATVIAKPSL AHLKDAWQQN STESLANGVS 120 AISLGEADEP EALSNDPSDR PICAFAAAGN CPLGESCRNI HGDLCTTCGK HCLHPYRPLD 180 RENHKIQCER NKKNLEALLK SQDIECSICL ERVLSKPTVA ERKFGLMSGC DHPFCVGCIR 240 GWRSGSHAPG MDIDTVVRAC PVCRVPTHYV VPSVVWYFSP EEKEEIINGY KNKLGEVDCR 300 HFDYGNGTCP FGTSCFYKHA FKDGTLEEVK LRHLGAADGN TVIVKNVRLS DFLKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.18485 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in dry seeds. Increased expression throughout imbibition and germination and when radicle and shoots are emerging. Up-regulated during cell differentiation. {ECO:0000269|PubMed:17870591}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in primary roots and leaves. Detected in vascular bundle tissues. {ECO:0000269|PubMed:17870591}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375821.1 | 0.0 | E3 ubiquitin-protein ligase makorin-like isoform X1 | ||||
Swissprot | Q5ZA07 | 1e-146 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A2K1KL26 | 0.0 | A0A2K1KL26_PHYPA; Uncharacterized protein | ||||
STRING | PP1S154_11V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-133 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_25680V3.2.p |
Publications ? help Back to Top | |||
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