PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c5_21130V3.6.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

VOZ

Protein Properties

Length: 481aa MW: 53791.5 Da PI: 6.922

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c5_21130V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	354.7	3.7e-109	196	414	3	217
VOZ 3 psaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 +a+l pkcalwdc+rp++gs++++ ycs fh++lalneg+pg+ pv+rp+gidlkdg+lfaal a+v+g+ vgipe +gaat+kspwna++ Pp3c5_21130V3.6.p 196 VAAHLHPKCALWDCPRPSRGSNEVTYYCSRFHEDLALNEGAPGMCPVVRPGGIDLKDGPLFAALAARVNGHAVGIPELQGAATSKSPWNATD 287 5799************************************************************************************** PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 lfd+++ +et+rewlffdkprrafesg rkqrslpdy grgwhesrkq+mk++gglkrsyymdpqp + ewh+yeye++ + ++alyrle Pp3c5_21130V3.6.p 288 LFDVAVYPSETLREWLFFDKPRRAFESGTRKQRSLPDYGGRGWHESRKQIMKDLGGLKRSYYMDPQPEGLNEWHMYEYELSVCTDCALYRLE 379 **************************************************************************************** PP VOZ 187 lklvd.ekksakgk..vsk.dsladlqkklgrlta 217 lk+vd ++ks+k+k v++ +s+a lq+++grl+a Pp3c5_21130V3.6.p 380 LKQVDvSRKSSKTKaqVQAdSSVASLQHQIGRLSA 414 9557898888445541579********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MSKDMVVKQK HSRSSQHFRA KANNRVDDLQ SMVSGLQQAR REGRHKDVSL LEEQMHQMLR 60 EWKAELREAS PACSLLQIVS PCNSELSSHM ERLLQLHDED DDATSKAPPT PEVNDQQPYN 120 DYHPLISSSA HLEAEIIEAY LRIEQTLQED IQSTYLVATS SGLYDDALQC SPRPQQNPKI 180 HTMLDHFTMA AMVSPVAAHL HPKCALWDCP RPSRGSNEVT YYCSRFHEDL ALNEGAPGMC 240 PVVRPGGIDL KDGPLFAALA ARVNGHAVGI PELQGAATSK SPWNATDLFD VAVYPSETLR 300 EWLFFDKPRR AFESGTRKQR SLPDYGGRGW HESRKQIMKD LGGLKRSYYM DPQPEGLNEW 360 HMYEYELSVC TDCALYRLEL KQVDVSRKSS KTKAQVQADS SVASLQHQIG RLSADLSQFQ 420 CQNHVLSNLR ESRDNNRGRG KASQKRGIIK SPGPGPLVSA VLAGSFSGEH TPFNYTAELP 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MSKDMVVKQK HSRSSQHFRA KANNRVDDLQ SMVSGLQQAR REGRHKDVSL LEEQMHQMLR  60
EWKAELREAS PACSLLQIVS PCNSELSSHM ERLLQLHDED DDATSKAPPT PEVNDQQPYN  120
DYHPLISSSA HLEAEIIEAY LRIEQTLQED IQSTYLVATS SGLYDDALQC SPRPQQNPKI  180
HTMLDHFTMA AMVSPVAAHL HPKCALWDCP RPSRGSNEVT YYCSRFHEDL ALNEGAPGMC  240
PVVRPGGIDL KDGPLFAALA ARVNGHAVGI PELQGAATSK SPWNATDLFD VAVYPSETLR  300
EWLFFDKPRR AFESGTRKQR SLPDYGGRGW HESRKQIMKD LGGLKRSYYM DPQPEGLNEW  360
HMYEYELSVC TDCALYRLEL KQVDVSRKSS KTKAQVQADS SVASLQHQIG RLSADLSQFQ  420
CQNHVLSNLR ESRDNNRGRG KASQKRGIIK SPGPGPLVSA VLAGSFSGEH TPFNYTAELP  480
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.1315	0.0	protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376071.1	0.0	transcription factor VOZ1-like isoform X1
Refseq	XP_024376072.1	0.0	transcription factor VOZ1-like isoform X1
Swissprot	Q9SGQ0	1e-137	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A9TF76	0.0	A9TF76_PHYPA; Predicted protein
STRING	PP1S218_56V6.2	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-139	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Pp3c5_21130V3.6.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]