PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_21130V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | VOZ | ||||||||
Protein Properties | Length: 450aa MW: 50180.4 Da PI: 6.4597 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 354.9 | 3.1e-109 | 165 | 383 | 3 | 217 |
VOZ 3 psaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 +a+l pkcalwdc+rp++gs++++ ycs fh++lalneg+pg+ pv+rp+gidlkdg+lfaal a+v+g+ vgipe +gaat+kspwna++ Pp3c5_21130V3.2.p 165 VAAHLHPKCALWDCPRPSRGSNEVTYYCSRFHEDLALNEGAPGMCPVVRPGGIDLKDGPLFAALAARVNGHAVGIPELQGAATSKSPWNATD 256 5799**************************************************************************************** PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 lfd+++ +et+rewlffdkprrafesg rkqrslpdy grgwhesrkq+mk++gglkrsyymdpqp + ewh+yeye++ + ++alyrle Pp3c5_21130V3.2.p 257 LFDVAVYPSETLREWLFFDKPRRAFESGTRKQRSLPDYGGRGWHESRKQIMKDLGGLKRSYYMDPQPEGLNEWHMYEYELSVCTDCALYRLE 348 ******************************************************************************************** PP VOZ 187 lklvd.ekksakgk..vsk.dsladlqkklgrlta 217 lk+vd ++ks+k+k v++ +s+a lq+++grl+a Pp3c5_21130V3.2.p 349 LKQVDvSRKSSKTKaqVQAdSSVASLQHQIGRLSA 383 ****9557898888445541579**********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MVSGLQQARR EGRHKDVSLL EEQMHQMLRE WKAELREASP ACSLLQIVSP CNSELSSHME 60 RLLQLHDEDD DATSKAPPTP EVNDQQPYND YHPLISSSAH LEAEIIEAYL RIEQTLQEDI 120 QSTYLVATSS GLYDDALQCS PRPQQNPKIH TMLDHFTMAA MVSPVAAHLH PKCALWDCPR 180 PSRGSNEVTY YCSRFHEDLA LNEGAPGMCP VVRPGGIDLK DGPLFAALAA RVNGHAVGIP 240 ELQGAATSKS PWNATDLFDV AVYPSETLRE WLFFDKPRRA FESGTRKQRS LPDYGGRGWH 300 ESRKQIMKDL GGLKRSYYMD PQPEGLNEWH MYEYELSVCT DCALYRLELK QVDVSRKSSK 360 TKAQVQADSS VASLQHQIGR LSADLSQFQC QNHVLSNLRE SRDNNRGRGK ASQKRGIIKS 420 PGPGPLVSAV LAGSFSGEHT PFNYTAELP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.1315 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024376071.1 | 0.0 | transcription factor VOZ1-like isoform X1 | ||||
Refseq | XP_024376072.1 | 0.0 | transcription factor VOZ1-like isoform X1 | ||||
Swissprot | Q9SGQ0 | 1e-128 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A9TF76 | 0.0 | A9TF76_PHYPA; Predicted protein | ||||
STRING | PP1S218_56V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-130 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_21130V3.2.p |
Publications ? help Back to Top | |||
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