PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_21130V3.1.p
Common NamePHYPADRAFT_194504
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family VOZ
Protein Properties Length: 392aa    MW: 43566.9 Da    PI: 6.3917
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_21130V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ355.42.2e-1091073253217
                VOZ   3 psaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 
                         +a+l pkcalwdc+rp++gs++++ ycs fh++lalneg+pg+ pv+rp+gidlkdg+lfaal a+v+g+ vgipe +gaat+kspwna++
  Pp3c5_21130V3.1.p 107 VAAHLHPKCALWDCPRPSRGSNEVTYYCSRFHEDLALNEGAPGMCPVVRPGGIDLKDGPLFAALAARVNGHAVGIPELQGAATSKSPWNATD 198
                        5799**************************************************************************************** PP

                VOZ  95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186
                        lfd+++  +et+rewlffdkprrafesg rkqrslpdy grgwhesrkq+mk++gglkrsyymdpqp +  ewh+yeye++ + ++alyrle
  Pp3c5_21130V3.1.p 199 LFDVAVYPSETLREWLFFDKPRRAFESGTRKQRSLPDYGGRGWHESRKQIMKDLGGLKRSYYMDPQPEGLNEWHMYEYELSVCTDCALYRLE 290
                        ******************************************************************************************** PP

                VOZ 187 lklvd.ekksakgk..vsk.dsladlqkklgrlta 217
                        lk+vd ++ks+k+k  v++ +s+a lq+++grl+a
  Pp3c5_21130V3.1.p 291 LKQVDvSRKSSKTKaqVQAdSSVASLQHQIGRLSA 325
                        ****9557898888445541579**********97 PP
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MERLLQLHDE DDDATSKAPP TPEVNDQQPY NDYHPLISSS AHLEAEIIEA YLRIEQTLQE  60
DIQSTYLVAT SSGLYDDALQ CSPRPQQNPK IHTMLDHFTM AAMVSPVAAH LHPKCALWDC  120
PRPSRGSNEV TYYCSRFHED LALNEGAPGM CPVVRPGGID LKDGPLFAAL AARVNGHAVG  180
IPELQGAATS KSPWNATDLF DVAVYPSETL REWLFFDKPR RAFESGTRKQ RSLPDYGGRG  240
WHESRKQIMK DLGGLKRSYY MDPQPEGLNE WHMYEYELSV CTDCALYRLE LKQVDVSRKS  300
SKTKAQVQAD SSVASLQHQI GRLSADLSQF QCQNHVLSNL RESRDNNRGR GKASQKRGII  360
KSPGPGPLVS AVLAGSFSGE HTPFNYTAEL P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.13150.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376071.10.0transcription factor VOZ1-like isoform X1
RefseqXP_024376072.10.0transcription factor VOZ1-like isoform X1
SwissprotQ9SGQ01e-108VOZ1_ARATH; Transcription factor VOZ1
TrEMBLA9TF760.0A9TF76_PHYPA; Predicted protein
STRINGPP1S218_56V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-111vascular plant one zinc finger protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yasui Y,Kohchi T
    VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5
    [PMID:25351333]
  4. Kumar S,Choudhary P,Gupta M,Nath U
    VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition.
    Plant Physiol., 2018. 176(4): p. 2917-2930
    [PMID:29507119]
  5. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]