PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_14060V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 644aa    MW: 68195.8 Da    PI: 7.4354
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_14060V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.51.9e-07253273526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++f++ G C++Gd C FaHg
  Pp3c5_14060V3.1.p 253 ACPDFRK-GSCRRGDMCEFAHG 273
                        7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-6248274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695249275IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5253273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-5253275IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.085283307IPR000571Zinc finger, CCCH-type
SMARTSM0035611283306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MLAVLQRQQE RQFIGGGVES AFMSGGAGGL SSLEGGVSSH ESMVDYVPMS QHMQTQHAMR  60
RLNSFSPSVS KEGEGAMNGV SPQVFQRSQS FGGGGGGATV HSHAFNNLFS SPPSSPVSKG  120
ECLGLSLLEE ESLMEVGGGK ASFFEEVGKG GGRAELRGLS LAPGSPLGGG GSSMGSPTFS  180
DALFNKFLPS NNEDEEAWPA VDMYGCDQFR MFEFKVRRCM RGRSHDWTEC PFAHPGEKAR  240
RRDPRRFHYS GTACPDFRKG SCRRGDMCEF AHGVFECWLH PARYRTQPCK DGRNCRRRVC  300
FFAHTPEQLR LLPAAAQAAT TAARNGGSYD GSPRASVAAS YDGAFAYEGV SYDGASVGLV  360
GSALSHFSGY SSSGHSGAGC VASQNSSPRS TLVGHAQYPA PLSPPLSPSG SPPLSPGSPE  420
EWAGSGGAFA SLSMSGMSGA QSAMSLQASL QQAAQVRSLG GHAQPCTVPA HRRHLDRLNS  480
MPTLSIPSAG EHRGVHSGGH LGVHPGSAPS SPSGVAQKSM MELIATLQQL EVRGAPPGSA  540
AQWLQQQYTT GPSPLRRCSQ SVPGTPTKVS ARWEQKERWE VDENDEGEPT VQRVESGRDL  600
RAKIYGRLGR SSLKDAGPAM GDSPDLDWVN DLVKEEPEQS AAW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376481.10.0zinc finger CCCH domain-containing protein 30-like
TrEMBLA0A2K1KJM20.0A0A2K1KJM2_PHYPA; Uncharacterized protein
STRINGPP1S297_45V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.15e-72C3H family protein