PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c5_11150V3.1.p | ||||||||
Common Name | PHYPADRAFT_94562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 23102.2 Da PI: 10.7812 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35 | 3.4e-11 | 100 | 143 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaia 48 sgy+G+r +k +Wv+e r + + k+ +lg+++t++eAa a++a Pp3c5_11150V3.1.p 100 SGYTGIRLRKD--KWVCEMRIsET----TeKKMWLGSYDTEKEAALAYDA 143 89*****9985..********442....36**********99******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-6 | 100 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-11 | 100 | 158 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.615 | 101 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-4 | 101 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-14 | 102 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MLQRRRSDWG IVLTMLSAYS KSSRIGRQFR ERRTESVRIS TASIFSAVSM MFDSSTQCTS 60 TARWIHRSSP NTLWQAEITP ASSSRTPGTP RRALTLRSTS GYTGIRLRKD KWVCEMRISE 120 TTEKKMWLGS YDTEKEAALA YDAGLHHCST RRVKQYNFSS SPRLLGPQAR LEHLSSVDRR 180 FIVKVIAEEY ARNYYTRDIE * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024375416.1 | 2e-62 | uncharacterized protein LOC112282244 | ||||
Refseq | XP_024375417.1 | 2e-62 | uncharacterized protein LOC112282244 | ||||
TrEMBL | A0A2K1KJ98 | 1e-144 | A0A2K1KJ98_PHYPA; Uncharacterized protein | ||||
STRING | PP1S263_66V6.1 | 1e-107 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 2e-11 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c5_11150V3.1.p |
Entrez Gene | 5942923 |
Publications ? help Back to Top | |||
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