PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_6870V3.8.p
Common NamePHYPADRAFT_86194
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 530aa    MW: 57022.3 Da    PI: 7.7197
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_6870V3.8.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like971.4e-30245299155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+rlrWtp LHe+Fv av++LGG+++AtPk++l+lm+ +++t++hvkSHLQkYRl
  Pp3c4_6870V3.8.p 245 KARLRWTPALHEKFVAAVAKLGGPDRATPKSVLRLMGCNDITIYHVKSHLQKYRL 299
                       68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.019242303IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-28244299IPR009057Homeodomain-like
SuperFamilySSF466891.22E-15244300IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-23245299IPR006447Myb domain, plants
PfamPF002492.8E-8247298IPR001005SANT/Myb domain
PfamPF143799.4E-18329372IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MASHEHGSRQ QVPILADSAS ELKSPEWSHR NEHNNSQFRE PNCAPPWQGA PSAIETSNVL  60
APGSPPSLAL THSQGETLSL PLQAETNPLW NCPYTQFAKP ASESALRKPS PMMPVAVSDF  120
VSSQEATAKV PAATTNTRLD SFQVLLAEAS SSQQPDGSNL SQPVKSPILK SEWETSGWPH  180
LIHRREMANP PDMLQEPSIA PQTVASSPLL STQHPQAEQS QRSTGGSPGP SIEATPMFSA  240
AEVAKARLRW TPALHEKFVA AVAKLGGPDR ATPKSVLRLM GCNDITIYHV KSHLQKYRLI  300
PETSTAESKC ERKRHNHCQG GFDVTSTTKM SQALQMQMEV QKRLHEQLET QRQLQLRIEE  360
QGANLQRMII EQVIAGHALG IPSDQITNGE LLSNAVSQAL HPSDSSNLFP GITPSKLSQQ  420
PTSWTHTAST STGPPPKRTR VEVPALVLIP KIAPKVKYTM PAETSCSHGS APFANIDPLS  480
QMGNTAIQAA AAPRGDADAM PASRHVNRPQ GCVPMQHDGA AAAPMQTSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-19244298155Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-19244298155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-19244298155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-19244298155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-19244298155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-19244298155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-19244298155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-19244298155Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373847.10.0uncharacterized protein LOC112281493 isoform X2
TrEMBLA9SZS20.0A9SZS2_PHYPA; Predicted protein
STRINGPP1S143_30V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-36G2-like family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]