PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_6870V3.2.p | ||||||||
Common Name | PHYPADRAFT_86194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 534aa MW: 57380.7 Da PI: 7.7197 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97 | 1.4e-30 | 249 | 303 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp LHe+Fv av++LGG+++AtPk++l+lm+ +++t++hvkSHLQkYRl Pp3c4_6870V3.2.p 249 KARLRWTPALHEKFVAAVAKLGGPDRATPKSVLRLMGCNDITIYHVKSHLQKYRL 303 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.019 | 246 | 307 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 248 | 303 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-15 | 248 | 304 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-23 | 249 | 303 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-8 | 251 | 302 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.5E-18 | 333 | 376 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MASHEHGSRQ QVPILADSAS ELKSPEWSHR NEHNNSQFRE PNCAPPWQGA PSAIETSNVL 60 APGSPPSLAL THSQGETLSL PLQAETNPLW NCPYTQFAKP ASESALRKPS PMMPVAVSDF 120 VSSQEATAKV PAATTNTRLD SFQVLLAEAS SSQQPDGSNL SQPVKSPILK SEWETSGWPH 180 LIHRREMANP PDMLQEPSIA PQTVASSPLL STQHPQAEQS QRSTVATSGG SPGPSIEATP 240 MFSAAEVAKA RLRWTPALHE KFVAAVAKLG GPDRATPKSV LRLMGCNDIT IYHVKSHLQK 300 YRLIPETSTA ESKCERKRHN HCQGGFDVTS TTKMSQALQM QMEVQKRLHE QLETQRQLQL 360 RIEEQGANLQ RMIIEQVIAG HALGIPSDQI TNGELLSNAV SQALHPSDSS NLFPGITPSK 420 LSQQPTSWTH TASTSTGPPP KRTRVEVPAL VLIPKIAPKV KYTMPAETSC SHGSAPFANI 480 DPLSQMGNTA IQAAAAPRGD ADAMPASRHV NRPQGCVPMQ HDGAAAAPMQ TSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-19 | 248 | 302 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-19 | 248 | 302 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-19 | 248 | 302 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-19 | 248 | 302 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-19 | 248 | 302 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-19 | 248 | 302 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-19 | 248 | 302 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-19 | 248 | 302 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373846.1 | 0.0 | uncharacterized protein LOC112281493 isoform X1 | ||||
TrEMBL | A9SZS2 | 0.0 | A9SZS2_PHYPA; Predicted protein | ||||
STRING | PP1S143_30V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-36 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_6870V3.2.p |
Entrez Gene | 5935124 |
Publications ? help Back to Top | |||
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