PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_6870V3.11.p | ||||||||
Common Name | PHYPADRAFT_86194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | G2-like | ||||||||
Protein Properties | Length: 446aa MW: 47605.3 Da PI: 7.0491 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.3 | 1.1e-30 | 346 | 400 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp LHe+Fv av++LGG+++AtPk++l+lm+ +++t++hvkSHLQkYRl Pp3c4_6870V3.11.p 346 KARLRWTPALHEKFVAAVAKLGGPDRATPKSVLRLMGCNDITIYHVKSHLQKYRL 400 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.019 | 343 | 404 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 345 | 400 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.5E-16 | 345 | 401 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-23 | 346 | 400 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-8 | 348 | 399 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MCVVASMAPI SSASASHVPA SQSCVAGASE ECVAPLARFV SRQEDGTSLS LNRAQSISEV 60 FGGSQVISPK ASSGQSFFVA PQGFHEDYDL QYVVNVAMAS HEHGSRQQVP ILADSASELK 120 SPEWSHRNEH NNSQFREPNC APPWQGAPSA IETSNVLAPG SPPSLALTHS QGETLSLPLQ 180 AETNPLWNCP YTQFAKPASE SALRKPSPMM PVAVSDFVSS QEATAKVPAA TTNTRLDSFQ 240 VLLAEASSSQ QPDGSNLSQP VKSPILKSEW ETSGWPHLIH RREMANPPDM LQEPSIAPQT 300 VASSPLLSTQ HPQAEQSQRS TVATSGGSPG PSIEATPMFS AAEVAKARLR WTPALHEKFV 360 AAVAKLGGPD RATPKSVLRL MGCNDITIYH VKSHLQKYRL IPETSTAESK CERKRHNHCQ 420 GGFDVTSPSG SFSCGLKSRV PTSRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-19 | 345 | 399 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-19 | 345 | 399 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-19 | 345 | 399 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-19 | 345 | 399 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-19 | 345 | 399 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-19 | 345 | 399 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-19 | 345 | 399 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-19 | 345 | 399 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373848.1 | 0.0 | uncharacterized protein LOC112281493 isoform X3 | ||||
TrEMBL | A9SZS2 | 0.0 | A9SZS2_PHYPA; Predicted protein | ||||
STRING | PP1S143_30V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-27 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_6870V3.11.p |
Entrez Gene | 5935124 |
Publications ? help Back to Top | |||
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