PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_6000V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | SBP | ||||||||
Protein Properties | Length: 680aa MW: 73917.5 Da PI: 6.9069 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.3 | 7.2e-41 | 211 | 288 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl+ +k+y+rrhkvCe+hsk+p v+v g++qrfCqqCsrfh+l efD++krsCr+rLa+hn+rrrk+q+ Pp3c4_6000V3.2.p 211 TCQAEGCKADLNVTKNYYRRHKVCEFHSKTPIVIVGGHTQRFCQQCSRFHRLGEFDDGKRSCRKRLADHNRRRRKAQP 288 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.5E-34 | 204 | 273 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.966 | 209 | 286 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.54E-38 | 210 | 289 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.9E-30 | 212 | 285 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MIPSAGNNEQ QGDPNWATEN WDHSGAVGGL DQASRQYSGA NGSEWEWDPM ILAQHHGSGG 60 SIDGSDGDHK HKISVGTMSS LQAPRDMPSA GVPSNFAHSP MCIFSSAGIQ NLGFLDGSGQ 120 PPITANLHST LESSGKPGLA ATNGTSLHSD IRSYDQRRCE FSAASMHDHH IKREKIVLNL 180 GVRTYFSNQD AAVGRLSKRH RVGSPGSQLP TCQAEGCKAD LNVTKNYYRR HKVCEFHSKT 240 PIVIVGGHTQ RFCQQCSRFH RLGEFDDGKR SCRKRLADHN RRRRKAQPNA PTSGGISAES 300 TSAIKVGDDG ELHTSFSRLN DPKSMLDMYL EKKCGCPSFL TLEDTNEKLD SAGYKLKLRT 360 SDLDFCRSPR DDHRSSYPGM SMNSQLMTCS EAQASLSALS FSLPGPFPEH KPQRQLTMLA 420 VTEEYDRGNS VYQHHMQGVG GSQSGPNLSL SSPRDQQGLQ GRGRRRPMSG QSCNGTEHPV 480 HWLRPINANS DNMTQVVSRQ GAMRMQALLP TETKSGITSA SANSSNSQEH DVEAFSPINQ 540 NLLPQGSSDL SSPDWMSVSM REAQTSRSDF SRFGPSTPMS NLLGSDQLQA VDQMLDLIGT 600 SNQADANPGN DGCSQNVLAR NAQMEYLQQK DTGTDSGGDD SSWGGSCTVD SPDLKYSDLQ 660 PLRPGSYGTP TYDSHQDLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-27 | 203 | 285 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF016494 | 0.0 | EF016494.1 Physcomitrella patens SBP-domain protein 9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372366.1 | 0.0 | uncharacterized protein LOC112280779 isoform X1 | ||||
TrEMBL | A0A2K1KMD1 | 0.0 | A0A2K1KMD1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S337_52V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 7e-43 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_6000V3.2.p |
Publications ? help Back to Top | |||
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