PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_370V3.7.p | ||||||||
Common Name | PHYPADRAFT_170895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HB-PHD | ||||||||
Protein Properties | Length: 793aa MW: 85662.8 Da PI: 4.4258 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 6.9e-09 | 625 | 665 | 13 | 53 |
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 e+L nr ps++++eeLA klgL+ +qV WF+N+R Pp3c4_370V3.7.p 625 EALRCILDVNRLPSKSRKEELAIKLGLSFSQVHGWFKNQRH 665 566666677999***************************96 PP | |||||||
2 | PHD | 41 | 4.4e-14 | 187 | 242 | 1 | 51 |
SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+++++ +++++lCdg C++ fH++Cl+++l +e++p g wlC+ C++k Pp3c4_370V3.7.p 187 FCAKCKSQEAlpDNDIILCDGaCNRGFHQYCLDPPLATEDIPPGdeGWLCPVCDCK 242 699****55455********66********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.11E-14 | 177 | 245 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.9E-13 | 183 | 242 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.941 | 185 | 242 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 5.86E-33 | 187 | 239 | No hit | No description |
Pfam | PF00628 | 1.5E-11 | 187 | 242 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 8.8E-10 | 187 | 240 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 188 | 239 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 6.8E-11 | 606 | 664 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.681 | 610 | 670 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.19E-11 | 612 | 673 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.2E-10 | 612 | 674 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.38E-10 | 613 | 670 | No hit | No description |
Pfam | PF00046 | 1.9E-6 | 624 | 665 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MVPTGVVERE DQPEPAAAPP VPVITPKTLR SHSIRTQTTP GDGDAGADHA PGAVAAAAAS 60 AGGGGAADVM QGNDAGQERR GRRRGRRKKS DVPLDNPTRI LKHVKYLLIK MRVHQNLLDA 120 YTGEGWKGQS REKIRPEQEL QRAKAQILRS KLAIREAIHE LDDVGLEGSL DKNAFDSEGR 180 IYHEEIFCAK CKSQEALPDN DIILCDGACN RGFHQYCLDP PLATEDIPPG DEGWLCPVCD 240 CKMECIEAIN SYFGTSFEVE NSWESFFSNE AGIAAGGGTQ EGAGGDWPSS GDEDDEYDPE 300 TAEGPSSASE SGAQVIGLAV DWPSSDDEDH DYDPEAAEEP PGASGSGTQT VGLDVDWPST 360 DDEDDDFDPE GIRKQANSDE ESSSDESEED GEDSGSVSGF RENEASSGVS DKDEQEPSEK 420 HNLELTAVTN IKKLARKGKR NIISNKGKSE YLESSDSDDS DVSLFDEFKG GNANLGLRRG 480 DPQAAVSAAD EEAVIIAGKR HRKAVDYKRL HDEMYGKAEA DNDDDVISED EDWGPERRRR 540 RTIPDDPNSP RSRIRGRKVR TPSGDISKGA DADLPSGLPD MPSHFPTGSQ GEVGSPQDIP 600 ALDGAADSPG GEKRMWRRLP DSAVEALRCI LDVNRLPSKS RKEELAIKLG LSFSQVHGWF 660 KNQRHQALRK GLACPKRIHP VASSSRDFNT VESPSSVATL TESTLPQKEN APNSILTEKL 720 DEVQVRLLEL KQALDDFTKN AAVVADGGSI ELDNNVENGG IGLPENGKRV VYVPVVADVR 780 EQSPMSTHTS AC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 86 | RRGRRRGRR |
2 | 536 | 541 | RRRRRT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.8576 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373962.1 | 0.0 | homeobox protein HOX1A-like | ||||
Refseq | XP_024373963.1 | 0.0 | homeobox protein HOX1A-like | ||||
TrEMBL | A9TMQ9 | 0.0 | A9TMQ9_PHYPA; Predicted protein | ||||
STRING | PP1S267_76V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 6e-71 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_370V3.7.p |
Entrez Gene | 5943109 |
Publications ? help Back to Top | |||
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