PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_370V3.5.p
Common NamePHYPADRAFT_170895
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HB-PHD
Protein Properties Length: 793aa    MW: 85662.8 Da    PI: 4.4258
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_370V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.16.9e-096256651353
                      HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      e+L      nr ps++++eeLA klgL+ +qV  WF+N+R 
  Pp3c4_370V3.5.p 625 EALRCILDVNRLPSKSRKEELAIKLGLSFSQVHGWFKNQRH 665
                      566666677999***************************96 PP
2PHD414.4e-14187242151
                      SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ C+++++  +++++lCdg C++ fH++Cl+++l +e++p g   wlC+ C++k
  Pp3c4_370V3.5.p 187 FCAKCKSQEAlpDNDIILCDGaCNRGFHQYCLDPPLATEDIPPGdeGWLCPVCDCK 242
                      699****55455********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.11E-14177245IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.9E-13183242IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.941185242IPR019787Zinc finger, PHD-finger
CDDcd155045.86E-33187239No hitNo description
PfamPF006281.5E-11187242IPR019787Zinc finger, PHD-finger
SMARTSM002498.8E-10187240IPR001965Zinc finger, PHD-type
PROSITE patternPS013590188239IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.8E-11606664IPR009057Homeodomain-like
PROSITE profilePS5007112.681610670IPR001356Homeobox domain
SuperFamilySSF466894.19E-11612673IPR009057Homeodomain-like
SMARTSM003898.2E-10612674IPR001356Homeobox domain
CDDcd000863.38E-10613670No hitNo description
PfamPF000461.9E-6624665IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MVPTGVVERE DQPEPAAAPP VPVITPKTLR SHSIRTQTTP GDGDAGADHA PGAVAAAAAS  60
AGGGGAADVM QGNDAGQERR GRRRGRRKKS DVPLDNPTRI LKHVKYLLIK MRVHQNLLDA  120
YTGEGWKGQS REKIRPEQEL QRAKAQILRS KLAIREAIHE LDDVGLEGSL DKNAFDSEGR  180
IYHEEIFCAK CKSQEALPDN DIILCDGACN RGFHQYCLDP PLATEDIPPG DEGWLCPVCD  240
CKMECIEAIN SYFGTSFEVE NSWESFFSNE AGIAAGGGTQ EGAGGDWPSS GDEDDEYDPE  300
TAEGPSSASE SGAQVIGLAV DWPSSDDEDH DYDPEAAEEP PGASGSGTQT VGLDVDWPST  360
DDEDDDFDPE GIRKQANSDE ESSSDESEED GEDSGSVSGF RENEASSGVS DKDEQEPSEK  420
HNLELTAVTN IKKLARKGKR NIISNKGKSE YLESSDSDDS DVSLFDEFKG GNANLGLRRG  480
DPQAAVSAAD EEAVIIAGKR HRKAVDYKRL HDEMYGKAEA DNDDDVISED EDWGPERRRR  540
RTIPDDPNSP RSRIRGRKVR TPSGDISKGA DADLPSGLPD MPSHFPTGSQ GEVGSPQDIP  600
ALDGAADSPG GEKRMWRRLP DSAVEALRCI LDVNRLPSKS RKEELAIKLG LSFSQVHGWF  660
KNQRHQALRK GLACPKRIHP VASSSRDFNT VESPSSVATL TESTLPQKEN APNSILTEKL  720
DEVQVRLLEL KQALDDFTKN AAVVADGGSI ELDNNVENGG IGLPENGKRV VYVPVVADVR  780
EQSPMSTHTS AC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRGRRRGRR
2536541RRRRRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.85760.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373962.10.0homeobox protein HOX1A-like
RefseqXP_024373963.10.0homeobox protein HOX1A-like
TrEMBLA9TMQ90.0A9TMQ9_PHYPA; Predicted protein
STRINGPP1S267_76V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.26e-71pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]