PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_29750V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 443aa    MW: 46417 Da    PI: 8.1347
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_29750V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.7e-092046127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C +G +C+++H+p
  Pp3c4_29750V3.6.p 20 PGEPDCVYYMRTGLCGFGMTCRYNHPP 46
                       5789*********************97 PP
2zf-CCCH352.4e-116791327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C+++++tGtCk+G++Ck++H++
  Pp3c4_29750V3.6.p 67 HPECQYYLKTGTCKFGATCKYHHPR 91
                       689********************96 PP
3zf-CCCH38.91.4e-12114137427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C +++rtG CkyG +CkF+H++
  Pp3c4_29750V3.6.p 114 KECAYYMRTGSCKYGVTCKFHHPQ 137
                        68********************97 PP
4zf-CCCH37.73.5e-12267293127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+++++tG Ck+G++C+++H++
  Pp3c4_29750V3.6.p 267 PGQPECQYYMKTGDCKFGSTCRYHHPK 293
                        5789*********************96 PP
5zf-CCCH37.34.5e-12314338226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        + ++C+f++r+G+Ck+G++CkF H+
  Pp3c4_29750V3.6.p 314 GNPPCSFYSRYGICKFGPTCKFDHP 338
                        669*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.4E-51946IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9621947IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-62146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.48E-52447IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-56491IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7276492IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-96791IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-66793IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-47092IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-6109138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479110138IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5112137IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10114137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5116136IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6266293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.657266294IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9268293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6270295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4272292IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887312340IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9316338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5316339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAMQGQEGVD GGQGPYPERP GEPDCVYYMR TGLCGFGMTC RYNHPPNRKL AAAATRGKGE  60
YPERVGHPEC QYYLKTGTCK FGATCKYHHP REKAGSTGRV HLNVLGLPLR LEEKECAYYM  120
RTGSCKYGVT CKFHHPQPAT VGGMVPLPFG SGGGPSSPAP QHYPPGGVPS WPLTRSPFPL  180
PRMQAPSSYG TMMPLQQGIM SMAGWNYQGP VGPAEGHQQG YVFGGAPQGE HVSGYGPYMQ  240
GSSAVGLPAH QATQAVGGQE TVFPERPGQP ECQYYMKTGD CKFGSTCRYH HPKDRATPSP  300
TCHLSPMGLP LRPGNPPCSF YSRYGICKFG PTCKFDHPLG GSLTYSPSAG SLTDLPVAPY  360
PVGSSPMNLA PSGYSEVPVE RQDAVEGGGY GEDGSSGGHH RVGRGNSEAA TASPPTVGEG  420
GGGVGGSGSG SGSTQAESVS KS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373414.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373415.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373416.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ2R4J41e-130C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A2K1KQG90.0A0A2K1KQG9_PHYPA; Uncharacterized protein
STRINGPP1S102_155V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-121zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]