PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_26880V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 526aa    MW: 57193.9 Da    PI: 5.2226
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_26880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.4e-32333390158
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        ++Dgy+WrKYGqK vk+s++prsYYrCt ++Cpv+k+ver+a+d  +v++tYeg+Hnh
  Pp3c4_26880V3.1.p 333 MEDGYKWRKYGQKAVKNSPYPRSYYRCTNPDCPVRKRVERKADDHGLVVTTYEGTHNH 390
                        58******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-33318390IPR003657WRKY domain
SuperFamilySSF1182903.92E-28325390IPR003657WRKY domain
PROSITE profilePS5081129.987328393IPR003657WRKY domain
SMARTSM007741.6E-36333392IPR003657WRKY domain
PfamPF031062.5E-25334390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSEMARKNAS DQRPVADSSS GIEQLMRSLG EDVNLSNSRN DTTKTTTKLA NASSLTVSPP  60
PRDSTIFFAS CLGLVNSPPP FDMSLFMPSP TAPWIHASPV GDTTVQSAQQ TSHGLNVNPN  120
TVSNLGLTNN VQSTPFEALS PSDSTDLLDA SPEYPWFPRD SNALMSNYNP LLQHLNLSPV  180
ATIPEERGLP SSSYNTGICI AGYQTLSDPF DLSSLAVSNE DKSPKRGSSP SSTRLNDVSP  240
LTSTPNSPFS SEDGYVSDCI ADDSAVGVSH NGSIIKRKTP DRALNESEEN QFPSEPSPKK  300
QTTNNLKKEK GAKSKRERKP RYAIQTRSDV DIMEDGYKWR KYGQKAVKNS PYPRSYYRCT  360
NPDCPVRKRV ERKADDHGLV VTTYEGTHNH LSHTTAGCLS KSSDTSATAP FSDQDPGTGV  420
ANFSLQPLSR ERSEFDLSIQ LIGQQGNQAC HDFATTGTSA SSSLSATQGM TMLYSLSRNP  480
NMLSEALKEN PLLGNDQFNN DRLSELQEDP AQHARETSTF MEDIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27323390774Probable WRKY transcription factor 4
2lex_A1e-27323390774Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896168e-45DQ889616.1 Physcomitrella patens clone 2 WKRY transcription factor-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373429.10.0probable WRKY transcription factor 32 isoform X2
TrEMBLA0A2K1KQ260.0A0A2K1KQ26_PHYPA; Uncharacterized protein
STRINGPP1S115_10V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.28e-36WRKY DNA-binding protein 57