PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_24380V3.1.p
Common NamePHYPADRAFT_163809
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 538aa    MW: 58279.2 Da    PI: 6.6988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_24380V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-094584981055
                        HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        r RR++iN+++ +L+ l+P+ a      K++ +++L +A++Y++ Lq
  Pp3c4_24380V3.1.p 458 RHRREKINERLKTLQHLVPNgA------KVDIVTMLDEAIHYVQFLQ 498
                        89******************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-13447513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.773448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13452508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-9457501No hitNo description
PfamPF000102.3E-6458498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048766Biological Processroot hair initiation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MTDLNSSLES PGSSVEETPA AANSVATSCE AMMWEAWSTQ PSTGDEASTS KLDLLPELVS  60
SSNSRLSFQQ SDLLSNMLSS FHPLSQHSSA GFELSHNRGG SEHSPEFLQE GSSEADTETS  120
SFGDLYINRQ TSRNSFLGSI ACPLPSNHSD SGKNIRREDL SNQLGAKSSA PLQLWQSLGP  180
ESPSSPLAYH NIGYRHSHGE KWETGSQSHS PWPTVSNTSS TIQLLGGRAA ENEVIQVLKS  240
NDSEISKSLA TLQQYGDHGR QLNLNHSSTT NHPEVIYSSK FGPKPSASSH TDVLMSSTNS  300
SFLSIPTAWS TPEYSMSGPS TRSEQFMNFV RIAQEQNSVP ISGPSPILGS YVGCSNRSKS  360
GISRVVSQET PTAKNRLLAC EGSSGPAPKR PSYAAHSDSH ADQAAAMWSS PNLRRSSFPS  420
ILTSQAMEIY AIGPALNTNG KPRARRGSAT DPQSVYARHR REKINERLKT LQHLVPNGAK  480
VDIVTMLDEA IHYVQFLQLQ VTLLKSDEYW MYATPNTYKG IDLTNSPPQT QRLQSSA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563951e-107EF156395.1 Physcomitrella patens Rhd6-like 3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372984.10.0uncharacterized protein LOC112281056
RefseqXP_024372985.10.0uncharacterized protein LOC112281056
RefseqXP_024372986.10.0uncharacterized protein LOC112281056
RefseqXP_024372987.10.0uncharacterized protein LOC112281056
TrEMBLA9SAG40.0A9SAG4_PHYPA; Predicted protein
STRINGPP1S60_187V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.18e-39ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]