PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_2120V3.1.p
Common NamePHYPADRAFT_167888
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 701aa    MW: 79518.6 Da    PI: 9.326
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_2120V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-12460500245
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       g+WT eE + l ++   +G++ Wk+I++++g  R  ++c+++w+
  Pp3c4_2120V3.1.p 460 GKWTSEEIQALMELQSVHGNN-WKKISAMIG--RDSYSCRDKWR 500
                       79*****************99.********8..**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174384455IPR001005SANT/Myb domain
PROSITE profilePS500904.193409453IPR017877Myb-like domain
SuperFamilySSF466893.39E-11433502IPR009057Homeodomain-like
PROSITE profilePS5129412.637454507IPR017930Myb domain
SMARTSM007179.6E-8458505IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-11460515IPR009057Homeodomain-like
CDDcd001671.27E-6461500No hitNo description
PfamPF139211.1E-11462524No hitNo description
PROSITE profilePS500907.039508580IPR017877Myb-like domain
SMARTSM007178.0E-6512582IPR001005SANT/Myb domain
CDDcd001670.00378515578No hitNo description
Gene3DG3DSA:1.10.10.602.7E-8516584IPR009057Homeodomain-like
SuperFamilySSF466891.8E-6559637IPR009057Homeodomain-like
PROSITE profilePS500906.853582635IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MVAKFHPSPG GGEDEAVTES AKKRTRKLKE PGVSSSAEPH RKKRKRVEEV ATDSAQVIED  60
FGAASGSESH LKRRRKKKKQ DESASSGPTL NLQDVEGFDV VSGGDVSLKK KKKNKKNSTT  120
TSVQNVVQVA EDPRPSSDGE SHGKKMKKDK KESIAVPVVV NDSQIVEGQE RVIDAEPKLR  180
KKKVKESIST ATIVNNFQIV EEPEPASDAE PLRKKKKKKK VMESVPTPGT VNGTQIVEDQ  240
ELVDGAEPQR KKKKTRKEAT PEPSTSDPET TSEDNDLVSG VELQSKKKKK KKKKKKPTTI  300
FPELNPTKIV DDSRPVTGSA TKTILRKQHT EAGNGAEPHR KKKVSFQLPD PTDDIPTENE  360
PPREESVSAE FYNWKNDRTR TDLVWGGYTP EEDGALKQAI FDYIQEQGWT REEGLKKILN  420
SRRSEAKGCW FVIRKCLPQR ELKRLYTRAR KILAPGTHLG KWTSEEIQAL MELQSVHGNN  480
WKKISAMIGR DSYSCRDKWR ITKWSHTKTG LKAGAWSAEE QQKLCALVLK SLHVKSQLAK  540
NGQLKKDHRV IRDDINWEFI SEKMEGRDRL SCMTQWYRKM ASSLVTSGDW ANGDDQLLLE  600
RLMEEFPLSE ELVEWDSLLK HRSGDICKRR WEQMLRSLGR SSAVQHQHFL EKLENVTKTF  660
APHLLDKEYD QQFAEEMQKA EAADKPDDED EDEEEEEDDD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A1e-1138663597324DNA-binding protein reb1
5eyb_B1e-1138663597324DNA-binding protein reb1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12143KKRTRKLKEPGVSSSAEPHRKKR
24045RKKRKR
37077LKRRRKKK
47378RRKKKK
5107114LKKKKKNK
6286295KKKKKKKKKK
7287295KKKKKKKKK
8289295KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.50470.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373559.10.0RNA polymerase I termination factor-like isoform X1
TrEMBLA0A2K1KLW40.0A0A2K1KLW4_PHYPA; Uncharacterized protein
STRINGPP1S160_61V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-49MYB_related family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]