PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_16130V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 305aa    MW: 34401.5 Da    PI: 9.821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_16130V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-0599121223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C++C+++F++  +L+ H +  H
  Pp3c4_16130V3.1.p  99 TCSICTRVFPTTRLLNLHVSEtH 121
                        6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.97196IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807396IPR007087Zinc finger, C2H2
SMARTSM003550.2698121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100121IPR007087Zinc finger, C2H2
SMARTSM003555.2136161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDLGKMKDGA EQTSPLFRAW VAARRPFKVD SPFFAAGNVE RELVAKQISL EITEEEKKHI  60
VQSEEEQLWE IFCPIVGCRT KLKGVGELES HYLSRHSATC SICTRVFPTT RLLNLHVSET  120
HDSFFRAKVA LNYPMYECLM EGCSARFLSD SNRHQHLVDK HHFPRSFRFH VKKHASQKQR  180
QRQKAHQPSN SGSTPKQSKK NQRAKAASES APDVHTDRKD YESTTPSETQ NQDTPMDVDE  240
LVTAVSRLST VSQDETPSVL RFGHRRGRGV PFGQKSRGSG RGRGRGRSGR DQEDDSPPLQ  300
SIST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276285RGSGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372618.10.0zinc finger protein 511-like
TrEMBLA0A2K1KNN70.0A0A2K1KNN7_PHYPA; Uncharacterized protein
STRINGPP1S13_318V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP75381313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.18e-70zinc ion binding;nucleic acid binding;zinc ion binding