PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_15980V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 1209aa MW: 130935 Da PI: 9.8685

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_15980V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	620	640	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C +far G Ck+G+ C+FaH Pp3c4_15980V3.1.p 620 PVCLDFAR-GRCKRGNVCRFAH 640 78****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF109905	1.13E-12	92	166	IPR000061	SWAP/Surp
SMART	SM00648	1.6E-4	112	171	IPR000061	SWAP/Surp
PROSITE profile	PS50128	10.888	114	162	IPR000061	SWAP/Surp
Pfam	PF01805	2.0E-7	115	148	IPR000061	SWAP/Surp
PROSITE profile	PS50103	13.882	616	643	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.0E-4	616	642	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-4	619	640	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	621	642	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1209 aa Download sequence Send to blast
MLRPGLGLVS LQGTAQSSSP GPSRTLVSNP SQSGPPFAMH GRGGSPGPFP EHLQHFSGQY 60 PGYPGPQRGA GPPPSHHAGD APTDRMPSST PIVAEWRAVE EPPLAPQDSD MLKNIDILSG 120 FVVKNGPQFE DMARHKQADD PKFAFLFGGV PGSEAAIGKA YYEWKKRSLI AAANLPADPF 180 VQPRSNNEPE VFPPSPLPDT PHSPHGSDMD MEDDFEKPSQ STEIRCEQVQ EPVSSLPAKK 240 EPVLSSKMET NAKPQGAQNP RVPIPLTVTY QSSSTTASVA PPQVSSSVGV SSRPQSNSAR 300 DDLPKRKDTR RRTGFDRSCM EDVTPVSSPP VQAKSQELEA AGQGHGSRSS SRVSRWGPQD 360 RSLGYDSSRK VSPSVDASNK NSDQGSEIPH VNVVDRSGVE DRLEAVTPPR DNDSEHKREG 420 DKNSQLEDAS TKSEDRKTTE YSTMPDRDQP KDSSLRLENR KMRVSDDRKS RDSTTLEESR 480 IQDEPPRASK QQKGVSELDP GNKGPTVDEF GRFIRPGGSE SDAEDSHYDR KRRHASRSRS 540 RSPPDNRRRR RSRSSSPRRH SRRSHSRSRS PRRRRSWSKS PGRETRRGGD SARGRERGNQ 600 DRNDRGGRRG GRGDRGGGPP VCLDFARGRC KRGNVCRFAH TESTNDPSTE GRYDRGGGRG 660 GRGSRLDDRQ ESHDSGRSHG GGSSRSGWNE QNPRGRRGWE PTDQKEKCYN KELRKSMEDF 720 AREQPETSPV SDYGDEAKLS ERRNNERSKD RSYQDANATN SVESGSFAVE THAPFSGGPD 780 GLPSLAQLPP PPPLPHHSQG FSSSSVPPQQ SYMGYLPSQS GFNLPPPPPP PLMNQSENLS 840 MPQPSYGNSG APQPALPPQV SSGIANLPMR PAVSTGPSQV GGQSMAPTSR SSYTWQSTPT 900 AAPASIAYNG QSIQASGAQS NYGLPPPPPP PSAAYTSTLS RYQLPQQSQA AQPGGQFNVM 960 AMDRPELGPP GARDAGVKGG QDNTAVVSRP NMGQWKSSGG NGTSTHMDDV VLESVSPGLP 1020 GHHRMENLSP GPGPGLVMES VSPALVAYAS NTSTVPTQGT GASTFGSSQQ DNPNVAGLES 1080 VSPAPEEPQN WSPGGGGDTN KDDKRGDKRD RRDKDHKSDK DHKVKGMTFL RTAVAEHVKE 1140 TLKPTWREGQ MSKEAFKTIA KKAVDKVLSA IKPHQVPTTE EKVEAYMMIA RPKISKLVQG 1200 YVDKYVKT*

Sequence ? help Back to Top

Protein Sequence Length: 1209 aa Download sequence Send to blast

MLRPGLGLVS LQGTAQSSSP GPSRTLVSNP SQSGPPFAMH GRGGSPGPFP EHLQHFSGQY  60
PGYPGPQRGA GPPPSHHAGD APTDRMPSST PIVAEWRAVE EPPLAPQDSD MLKNIDILSG  120
FVVKNGPQFE DMARHKQADD PKFAFLFGGV PGSEAAIGKA YYEWKKRSLI AAANLPADPF  180
VQPRSNNEPE VFPPSPLPDT PHSPHGSDMD MEDDFEKPSQ STEIRCEQVQ EPVSSLPAKK  240
EPVLSSKMET NAKPQGAQNP RVPIPLTVTY QSSSTTASVA PPQVSSSVGV SSRPQSNSAR  300
DDLPKRKDTR RRTGFDRSCM EDVTPVSSPP VQAKSQELEA AGQGHGSRSS SRVSRWGPQD  360
RSLGYDSSRK VSPSVDASNK NSDQGSEIPH VNVVDRSGVE DRLEAVTPPR DNDSEHKREG  420
DKNSQLEDAS TKSEDRKTTE YSTMPDRDQP KDSSLRLENR KMRVSDDRKS RDSTTLEESR  480
IQDEPPRASK QQKGVSELDP GNKGPTVDEF GRFIRPGGSE SDAEDSHYDR KRRHASRSRS  540
RSPPDNRRRR RSRSSSPRRH SRRSHSRSRS PRRRRSWSKS PGRETRRGGD SARGRERGNQ  600
DRNDRGGRRG GRGDRGGGPP VCLDFARGRC KRGNVCRFAH TESTNDPSTE GRYDRGGGRG  660
GRGSRLDDRQ ESHDSGRSHG GGSSRSGWNE QNPRGRRGWE PTDQKEKCYN KELRKSMEDF  720
AREQPETSPV SDYGDEAKLS ERRNNERSKD RSYQDANATN SVESGSFAVE THAPFSGGPD  780
GLPSLAQLPP PPPLPHHSQG FSSSSVPPQQ SYMGYLPSQS GFNLPPPPPP PLMNQSENLS  840
MPQPSYGNSG APQPALPPQV SSGIANLPMR PAVSTGPSQV GGQSMAPTSR SSYTWQSTPT  900
AAPASIAYNG QSIQASGAQS NYGLPPPPPP PSAAYTSTLS RYQLPQQSQA AQPGGQFNVM  960
AMDRPELGPP GARDAGVKGG QDNTAVVSRP NMGQWKSSGG NGTSTHMDDV VLESVSPGLP  1020
GHHRMENLSP GPGPGLVMES VSPALVAYAS NTSTVPTQGT GASTFGSSQQ DNPNVAGLES  1080
VSPAPEEPQN WSPGGGGDTN KDDKRGDKRD RRDKDHKSDK DHKVKGMTFL RTAVAEHVKE  1140
TLKPTWREGQ MSKEAFKTIA KKAVDKVLSA IKPHQVPTTE EKVEAYMMIA RPKISKLVQG  1200
YVDKYVKT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	530	550	KRRHASRSRSRSPPDNRRRRR
2	609	617	GGRGDRGGG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16593	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373658.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X1
Refseq	XP_024373659.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X1
Refseq	XP_024373660.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X1
TrEMBL	A0A2K1KNN1	0.0	A0A2K1KNN1_PHYPA; Uncharacterized protein
STRING	PP1S13_332V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-19	C3H family protein

Link Out ? help Back to Top
Phytozome	Pp3c4_15980V3.1.p