PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_9330V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB_related | ||||||||
Protein Properties | Length: 103aa MW: 11549.4 Da PI: 10.8342 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 17 | 47 | 13 | 45 |
HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwq 45 v++ ++lG++ W++Ia+++ gR ++++k++w Pp3c3_9330V3.1.p 17 VHCLTKLGNK-WAKIASCLH-GRIDNDVKNFWS 47 56899*****.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.76E-4 | 17 | 46 | No hit | No description |
Pfam | PF00249 | 2.1E-6 | 19 | 47 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.39E-6 | 19 | 54 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-10 | 20 | 49 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MILFVYYKVR LSTGLKVHCL TKLGNKWAKI ASCLHGRIDN DVKNFWSTRQ KRILRALQRP 60 KMPSGSIDAS TDTQEFSLLS RRHVSAVGGQ NLPQVTLGEH ND* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370343.1 | 2e-65 | probable transcription factor MYB58 | ||||
TrEMBL | A0A2K1KTU6 | 1e-70 | A0A2K1KTU6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S140_150V6.1 | 2e-71 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 2e-13 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_9330V3.1.p |