PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_8460V3.1.p | ||||||||
Common Name | PHYPADRAFT_231841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | bHLH | ||||||||
Protein Properties | Length: 561aa MW: 62228.3 Da PI: 8.0505 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.2 | 2.6e-07 | 477 | 517 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR++iN+++ +L++l+P+ + ++ +++Le+A++++k L+ Pp3c3_8460V3.1.p 477 RHRREKINERLKTLQRLVPNG-----EQVDIVTMLEEAIHFVKFLE 517 89*****************96.....58**************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.42E-12 | 466 | 527 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.087 | 467 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-10 | 471 | 526 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-10 | 473 | 522 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-8 | 476 | 521 | No hit | No description |
Pfam | PF00010 | 8.9E-5 | 477 | 517 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MGNYQKLSAD SASPSAYETI SASMHPPKVS SCEGMVWLEG WVSQASTNGE GSSSSTSAFK 60 LPEVVPTLPN TRLSFQDSGL LSNHWIPSFN TFSQHIPDIA AETLSLEFMQ ERLETLPEAS 120 FEELCMQHNS KPLYLNSIPS PVPNNHPHFD KSRREDFLHY AKTYAPFHAW QGLRVDRSPS 180 SPLAFHDTLT NSSGDEDTDG AQLRSTWLGK TSSTTIQLLR ASASENAWNN GQIKYNNSQK 240 LAKTDLLSNS NYSLSVVSNQ SHGNQSEILG SNRKGKAISR SEDFAFVRGH EPTASSHYEK 300 CMDPNGSFLP MSPIAQVLKY ATAGPSFVSN SQLQQSKTNF SNETNSTRGL TGNDLDLNFV 360 QKAQERLLAF QPASTASGYS ARVEQSRKNS YRFAMDRSSM SPSRRPNILG NQEAGLAWSP 420 YDTTQSRTTK SKLQCRHLLG TPSQAMDIIA VGPALNTNGR PRAKRGSATD PQSVYARHRR 480 EKINERLKTL QRLVPNGEQV DIVTMLEEAI HFVKFLEFQL ELLRSDDRWM FADPFIYNGM 540 DITGSYPHVP SGLERLNLRG * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF156399 | 1e-107 | EF156399.1 Physcomitrella patens Rhd6-like 7 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1KTQ2 | 0.0 | A0A2K1KTQ2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S140_48V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1048 | 14 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 2e-38 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_8460V3.1.p |
Entrez Gene | 5934823 |
Publications ? help Back to Top | |||
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