PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_33930V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 33667.3 Da PI: 10.5882 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2e-16 | 91 | 139 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g Wv eIr ++r++lg+f tae+Aa+a++ a+++l+g Pp3c3_33930V3.2.p 91 PVYRGVR-RP-WGTWVTEIRRsK-----KTRIWLGSFETAEMAARAHDTAALSLRG 139 68****8.89.**********33.....6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-9 | 91 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-16 | 92 | 147 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.73 | 92 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-28 | 92 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-26 | 92 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.95E-27 | 93 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MKSFSKGDGA STIQVTQQQF YLLVLVTSFS LPSLTLNQRN RESRYDNAAR QRFRADGGFI 60 GLRSFSVMVA SDSLPSKMLL KLADGKDSRH PVYRGVRRPW GTWVTEIRRS KKTRIWLGSF 120 ETAEMAARAH DTAALSLRGS SAHLNFPKLA SSLPRPHDLS DKCIQAAANE AAKRFSLEVT 180 SQRQFFMLDA TASSSIADSA NPHSHCKLQA IAVPNSLTRI PMLTTCNAEP EHPEEYFSSK 240 RTKLPLPTTP PNPSNYRENS VRALFLSPRF ERQEDVLLPM NAVSSHSTMA WQDLGTRIAI 300 LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 85 | 147 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370190.1 | 1e-174 | dehydration-responsive element-binding protein 3-like | ||||
TrEMBL | A0A2K1KX40 | 1e-172 | A0A2K1KX40_PHYPA; Uncharacterized protein | ||||
STRING | PP1S112_23V6.1 | 1e-173 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 5e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_33930V3.2.p |