PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_32860V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 759aa    MW: 81747.9 Da    PI: 6.9295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_32860V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.1e-31364422159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDg++WrKYGqK vk+s++pr+YYrCt++ Cpv+k+vers+ed  +v++tYeg+H h+
  Pp3c3_32860V3.5.p 364 LDDGFKWRKYGQKAVKNSPHPRNYYRCTTPLCPVRKRVERSKEDAGLVITTYEGTHSHQ 422
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-33349424IPR003657WRKY domain
SuperFamilySSF1182901.06E-27357424IPR003657WRKY domain
PROSITE profilePS5081130.871359424IPR003657WRKY domain
SMARTSM007742.2E-37364423IPR003657WRKY domain
PfamPF031062.1E-24365422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MADKAPNEEG SQCDSTLDQL LQRQDQTNQE ATVSLSNSGA SMAEPSSEYL TLTTSNPWTA  60
FNVSSPLNSD LQTAINGLYR TSQPPPLYLL TNPLAEFPWL LEDQTIESHQ RGDSRWACNL  120
DSHDPDQRCS THNSLSTSHG DQLRGDILER TGVGNSGPPL LSQSMWRDSI KEEPASSLTS  180
AGSPARSSKV ARKEFQGHGT PRGNYGSSSK SDAEPVPRFD RTTSSEELSI PSHSPVQFGG  240
SSQSPFPRSQ NYWPTSVSPR LSEAIQGAGG SVTTSAGTSN TSLSSESTSN AGDEDEVEKE  300
VSTTGSEGTS TGKRKMSEAS ASGEAGGTDP KKSEPKNKPR KRGGAKRLRE PRYAIKTRTD  360
MDVLDDGFKW RKYGQKAVKN SPHPRNYYRC TTPLCPVRKR VERSKEDAGL VITTYEGTHS  420
HQTPSFHRPG GGYFGDRPQV GGGLFLNPGQ SPLGSGSSLL PLPPGFDLPS LQQAAELRNP  480
RGLQLNQNFQ GSNPRQQLNP MVRGPFGFPG QDSIFRASQL LGLQDPAFDP IKQEQFHFNA  540
QPSDFISRNI PNLSQLPIQQ QFEQPGSSLA GSGPGPAQSP DRPISENDSM QRSGSGIIPQ  600
ISSPLLRGLN FPNLPSSHMG PASSSSTLYE PDSSSLTMSR GQLRHEPLVG GSSSRIDQSL  660
ETLIRRPQLS LESEPSDRSI GGSHGLGSGM DQRTRTGLQR TVLPTMQAQV QQTRPGIERN  720
SPSEQASEAV VVVPPDVAFG EGLLQDMVRH GTPKASRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-24352424274WRKY transcription factor 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.113330.0sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896175e-47DQ889617.1 Physcomitrella patens clone 3 WKRY transcription factor-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370869.10.0uncharacterized protein LOC112280083
RefseqXP_024370870.10.0uncharacterized protein LOC112280083
RefseqXP_024370871.10.0uncharacterized protein LOC112280083
TrEMBLA0A2K1KWX20.0A0A2K1KWX2_PHYPA; Uncharacterized protein
STRINGPP1S198_83V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-34WRKY DNA-binding protein 57