PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_29290V3.2.p | ||||||||
Common Name | PHYPADRAFT_75761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HB-PHD | ||||||||
Protein Properties | Length: 686aa MW: 74947.9 Da PI: 4.9886 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26 | 1.6e-08 | 546 | 577 | 22 | 53 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRa 53 + ps++++eeLA++lgL+ +qV WF+N+R+ Pp3c3_29290V3.2.p 546 TTLPSKSRKEELATQLGLSFSQVHGWFKNQRY 577 5679***************************7 PP | |||||||
2 | PHD | 40.6 | 5.8e-14 | 200 | 255 | 1 | 51 |
SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+++d+ +++++lCdg C++ fH++Cl+++l + ++p g wlC+ C++k Pp3c3_29290V3.2.p 200 FCAKCRSQDAlpDNDIILCDGaCNRGFHQYCLDPPLATINIPPGdeGWLCPVCECK 255 69*****66566********66********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 6.87E-16 | 191 | 259 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 3.6E-13 | 196 | 255 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.976 | 198 | 255 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 7.7E-10 | 200 | 253 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 2.10E-31 | 200 | 252 | No hit | No description |
Pfam | PF00628 | 2.3E-11 | 200 | 255 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 201 | 252 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 7.4E-10 | 508 | 576 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.548 | 522 | 582 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.91E-9 | 524 | 582 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.2E-7 | 524 | 586 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.57E-8 | 525 | 577 | No hit | No description |
Pfam | PF00046 | 5.0E-6 | 546 | 577 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MMPMGVVRDD ESQAAAGSPP APTPPPIAKP TLRSHSRSRA HKARSQHPPL GDGDAPLPPP 60 QGTATPGGGG AAAVGAPGAM DAEAMAAGQR RRRRRRRQRG KNSDVPLDNR TRIKRRVKYL 120 LMKMRVDQNL LDAYSGEGWK GQSREKIRPE QELQRAEAQI LHSKLAIREA IHELDNLGLE 180 GSLDENAFDA EGRVYHEEIF CAKCRSQDAL PDNDIILCDG ACNRGFHQYC LDPPLATINI 240 PPGDEGWLCP VCECKMECIE VINAYLGTHF EVENSWEELF SEEALVAAGG RTQGVTDGDF 300 PSSDSEDDDY NPEGAEKRTD SESEGESDEG GGDSDSGSDF RENEASGSDK DEQDPMQATN 360 LERLARTAKR TSKEGSGGPE SSGSDDSEVF LVDGFTDGGV KLGLRRRDSQ AEESASDEET 420 MVIAGKRHRK AVDYKRLHDE MFGNMEIDVD DIISEDEDWG PKRRRRRTIP DDPSRSRPPR 480 VRRRKARTST GDALKEVDAD GVPSDLPSGS QGEGAADTLE AVRDKRMWRK LPDSAVETLR 540 LAAAVTTLPS KSRKEELATQ LGLSFSQVHG WFKNQRYLAL RNGLAISKRP AAGRMAATVT 600 IQSEHDNNSS AYLTEKLDEV QMRLFELKQT LEDFAKNSSG LGGGESDNSF ENGGIGLPAN 660 GKRIIYVPVA EVRERPSVST HTSAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 94 | QRRRRRR |
2 | 89 | 96 | RRRRRRRR |
3 | 90 | 96 | RRRRRRR |
4 | 91 | 98 | RRRRRRQR |
5 | 461 | 466 | KRRRRR |
6 | 462 | 467 | RRRRRT |
7 | 464 | 484 | RRRTIPDDPSRSRPPRVRRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372275.1 | 0.0 | pathogenesis-related homeodomain protein-like | ||||
TrEMBL | A0A2K1KWH3 | 0.0 | A0A2K1KWH3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S55_45V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 7e-76 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_29290V3.2.p |
Entrez Gene | 5925753 |
Publications ? help Back to Top | |||
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