PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_29290V3.1.p
Common NamePHYPADRAFT_75761
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HB-PHD
Protein Properties Length: 686aa    MW: 74947.9 Da    PI: 4.9886
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_29290V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-085465772253
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                        +  ps++++eeLA++lgL+ +qV  WF+N+R+
  Pp3c3_29290V3.1.p 546 TTLPSKSRKEELATQLGLSFSQVHGWFKNQRY 577
                        5679***************************7 PP
2PHD40.65.8e-14200255151
                        SBTTTSSTCT..TSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgksde..egelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ C+++d+  +++++lCdg C++ fH++Cl+++l + ++p g   wlC+ C++k
  Pp3c3_29290V3.1.p 200 FCAKCRSQDAlpDNDIILCDGaCNRGFHQYCLDPPLATINIPPGdeGWLCPVCECK 255
                        69*****66566********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.87E-16191259IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.6E-13196255IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.976198255IPR019787Zinc finger, PHD-finger
SMARTSM002497.7E-10200253IPR001965Zinc finger, PHD-type
CDDcd155042.10E-31200252No hitNo description
PfamPF006282.3E-11200255IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590201252IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.607.4E-10508576IPR009057Homeodomain-like
PROSITE profilePS5007111.548522582IPR001356Homeobox domain
SuperFamilySSF466892.91E-9524582IPR009057Homeodomain-like
SMARTSM003896.2E-7524586IPR001356Homeobox domain
CDDcd000865.57E-8525577No hitNo description
PfamPF000465.0E-6546577IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MMPMGVVRDD ESQAAAGSPP APTPPPIAKP TLRSHSRSRA HKARSQHPPL GDGDAPLPPP  60
QGTATPGGGG AAAVGAPGAM DAEAMAAGQR RRRRRRRQRG KNSDVPLDNR TRIKRRVKYL  120
LMKMRVDQNL LDAYSGEGWK GQSREKIRPE QELQRAEAQI LHSKLAIREA IHELDNLGLE  180
GSLDENAFDA EGRVYHEEIF CAKCRSQDAL PDNDIILCDG ACNRGFHQYC LDPPLATINI  240
PPGDEGWLCP VCECKMECIE VINAYLGTHF EVENSWEELF SEEALVAAGG RTQGVTDGDF  300
PSSDSEDDDY NPEGAEKRTD SESEGESDEG GGDSDSGSDF RENEASGSDK DEQDPMQATN  360
LERLARTAKR TSKEGSGGPE SSGSDDSEVF LVDGFTDGGV KLGLRRRDSQ AEESASDEET  420
MVIAGKRHRK AVDYKRLHDE MFGNMEIDVD DIISEDEDWG PKRRRRRTIP DDPSRSRPPR  480
VRRRKARTST GDALKEVDAD GVPSDLPSGS QGEGAADTLE AVRDKRMWRK LPDSAVETLR  540
LAAAVTTLPS KSRKEELATQ LGLSFSQVHG WFKNQRYLAL RNGLAISKRP AAGRMAATVT  600
IQSEHDNNSS AYLTEKLDEV QMRLFELKQT LEDFAKNSSG LGGGESDNSF ENGGIGLPAN  660
GKRIIYVPVA EVRERPSVST HTSAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894QRRRRRR
28996RRRRRRRR
39096RRRRRRR
49198RRRRRRQR
5461466KRRRRR
6462467RRRRRT
7464484RRRTIPDDPSRSRPPRVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372275.10.0pathogenesis-related homeodomain protein-like
TrEMBLA0A2K1KWH30.0A0A2K1KWH3_PHYPA; Uncharacterized protein
STRINGPP1S55_45V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.27e-76pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]