PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_25240V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 522aa    MW: 61084.1 Da    PI: 9.2386
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_25240V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.7e-092754126
                       --S---SGGGGTS..--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
                       +k ++C  f+rt   tC++G+ C+F+H+
  Pp3c3_25240V3.4.p 27 WKIAICGEFMRTNykTCSHGSACNFMHC 54
                       7889***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR018486.0E-7832IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.9152656IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-62754IPR000571Zinc finger, CCCH-type
PRINTSPR018486.0E-74658IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MLAYNHMNGR FYAKKQISCE FVGVKKWKIA ICGEFMRTNY KTCSHGSACN FMHCFENPRR  60
EYEWADLDRP PPRFWQRKMA KLFGHAYISD EDFDEKQEKV RSHRESTYSN HMVRHRGDSV  120
STYDDDRRKD RHMKESVRED EHRRRSDGRE QKYCEDETKD RISRESKYDD RRRVKHSRDN  180
NHDTLRREKD FRDSTHHDDS ARDKSASRSM DDDDDDANDD ERYFQGHKKF ERWSPGRHGE  240
TDGREAVYSK DQRRGHKGAS YDYEDIDIGD ARHVARNSIT SDAAYHSHSR SHSHHSERHR  300
SRRRSRSPDG HKSRRSRSRD RSMSHSARGE DGYYSVGEHQ HRYSKTIRDN ERSSKESKQH  360
RQRSSTQSSN DAFGNQEASQ TLEGRVDEDV NRHRKRHSSQ DRRKYSESEH DQSLTTQESD  420
HTRIRHSKDL VGTIAAPTTD EDTSGNLSNL ERQSGLEVGI DVASQNQETD GSSSSDTVTG  480
LSLVLTTDDV QKSTSQWQSW RKAKAKKAKL GMKDHPPRLV I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1501507KAKAKKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.110580.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371055.10.0zinc finger CCCH domain-containing protein 5-like isoform X1
TrEMBLA0A2K1KVZ70.0A0A2K1KVZ7_PHYPA; Uncharacterized protein
STRINGPP1S333_32V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.13e-38C3H family protein