PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_25240V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 522aa MW: 61084.1 Da PI: 9.2386 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.7e-09 | 27 | 54 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C f+rt tC++G+ C+F+H+ Pp3c3_25240V3.3.p 27 WKIAICGEFMRTNykTCSHGSACNFMHC 54 7889***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01848 | 6.0E-7 | 8 | 32 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 10.915 | 26 | 56 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 6.0E-7 | 46 | 58 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MLAYNHMNGR FYAKKQISCE FVGVKKWKIA ICGEFMRTNY KTCSHGSACN FMHCFENPRR 60 EYEWADLDRP PPRFWQRKMA KLFGHAYISD EDFDEKQEKV RSHRESTYSN HMVRHRGDSV 120 STYDDDRRKD RHMKESVRED EHRRRSDGRE QKYCEDETKD RISRESKYDD RRRVKHSRDN 180 NHDTLRREKD FRDSTHHDDS ARDKSASRSM DDDDDDANDD ERYFQGHKKF ERWSPGRHGE 240 TDGREAVYSK DQRRGHKGAS YDYEDIDIGD ARHVARNSIT SDAAYHSHSR SHSHHSERHR 300 SRRRSRSPDG HKSRRSRSRD RSMSHSARGE DGYYSVGEHQ HRYSKTIRDN ERSSKESKQH 360 RQRSSTQSSN DAFGNQEASQ TLEGRVDEDV NRHRKRHSSQ DRRKYSESEH DQSLTTQESD 420 HTRIRHSKDL VGTIAAPTTD EDTSGNLSNL ERQSGLEVGI DVASQNQETD GSSSSDTVTG 480 LSLVLTTDDV QKSTSQWQSW RKAKAKKAKL GMKDHPPRLV I* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 501 | 507 | KAKAKKA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11058 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371055.1 | 0.0 | zinc finger CCCH domain-containing protein 5-like isoform X1 | ||||
TrEMBL | A0A2K1KVZ7 | 0.0 | A0A2K1KVZ7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S333_32V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 3e-38 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_25240V3.3.p |