PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_19940V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C3H | ||||||||
Protein Properties | Length: 492aa MW: 53008.1 Da PI: 7.5002 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 2e-08 | 151 | 174 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k+++C+++++ G C +Gd+C+F H Pp3c3_19940V3.2.p 151 PKQKPCSYWLK-GNCMRGDTCNFLH 174 699********.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.037 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0038 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-5 | 41 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-6 | 150 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.863 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-6 | 150 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-6 | 151 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 2.38E-46 | 181 | 230 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 4.4E-4 | 181 | 220 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 3.0E-45 | 182 | 480 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF00400 | 0.022 | 185 | 220 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.783 | 188 | 229 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 24.574 | 188 | 391 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 3.6E-7 | 207 | 221 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 207 | 221 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 0.0044 | 260 | 298 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.012 | 266 | 297 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 8.871 | 267 | 307 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 2.38E-46 | 268 | 486 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 4.5E-4 | 305 | 342 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.069 | 310 | 341 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.778 | 312 | 351 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 329 | 343 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 3.6E-7 | 329 | 343 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 6.0E-6 | 345 | 382 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.001 | 347 | 382 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 9.807 | 352 | 391 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 3.6E-7 | 369 | 383 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 130 | 402 | 440 | IPR001680 | WD40 repeat |
SMART | SM00320 | 16 | 443 | 480 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MMAGMEVDDG STRVGSKRNY SRSGNAAGSG GGAGGRSHGQ QVCRYWQEGR CVKGDDCQWL 60 HPGNAGSTGR GNSAGSAKRS NNAHEYRDRE ARDPAGGWGY GGGGFTSGSN QGRPRNVSAR 120 WGRGGRGGRS GRGSHDQRDN RFQEGGRSHT PKQKPCSYWL KGNCMRGDTC NFLHAHTTAP 180 DMEMTTVLNG HEKAVRAIVL PEAHAQLYTG SQDESVRVWD CTTGKCTNVA PMGGDVGALI 240 FAKGWLFVGL PNEVKVINMA TLQQANLSGP KGQVHALAVT DDGLLFAGTH DGTILIWQFN 300 AATNQFEPAA SMSGHTGPVV TLMLIANRLY SGSMDSTIRV WEFATLQCVQ ALEGHTNVVM 360 DLLCWDSFLL SCSLDGTIKI WSVNSSGQLE LTFSHPEEEN QSDSRNITLA GALKMCGCTD 420 KAGKPVLLCS YNDNIVRLYD LPTFTERGQL FSREEVRALQ VGLNNLVFSG DSRGDVKVWS 480 WIDTHPEAVV N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-19 | 188 | 479 | 11 | 325 | Tako8 |
6g6n_A | 2e-19 | 188 | 479 | 11 | 325 | Tako8 |
6g6n_B | 2e-19 | 188 | 479 | 11 | 325 | Tako8 |
6g6n_C | 2e-19 | 188 | 479 | 11 | 325 | Tako8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369315.1 | 0.0 | zinc finger CCCH domain-containing protein 17-like isoform X1 | ||||
TrEMBL | A0A2K1KV77 | 0.0 | A0A2K1KV77_PHYPA; Uncharacterized protein | ||||
STRING | PP1S204_77V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1065 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 1e-129 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_19940V3.2.p |