PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_19940V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 484aa    MW: 52081.1 Da    PI: 7.6708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_19940V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08151174125
                        --S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                        +k+++C+++++ G C +Gd+C+F H
  Pp3c3_19940V3.1.p 151 PKQKPCSYWLK-GNCMRGDTCNFLH 174
                        699********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0373764IPR000571Zinc finger, CCCH-type
SMARTSM003560.00383763IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-73862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-54161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.863150177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-6150175IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6150176IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-6151174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5152175IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.5E-39180478IPR017986WD40-repeat-containing domain
SMARTSM003204.4E-4181220IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.6E-13183275IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.022185220IPR001680WD40 repeat
PROSITE profilePS5008213.783188229IPR001680WD40 repeat
PROSITE profilePS5029412.736188229IPR017986WD40-repeat-containing domain
PRINTSPR003203.5E-7207221IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780207221IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.103.6E-29276475IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.5E-4297334IPR001680WD40 repeat
PfamPF004000.067302333IPR001680WD40 repeat
PROSITE profilePS5029418.062304383IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.778304343IPR001680WD40 repeat
PRINTSPR003203.5E-7321335IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780321335IPR019775WD40 repeat, conserved site
SMARTSM003206.0E-6337374IPR001680WD40 repeat
PfamPF004000.001339374IPR001680WD40 repeat
PROSITE profilePS500829.807344383IPR001680WD40 repeat
PRINTSPR003203.5E-7361375IPR020472G-protein beta WD-40 repeat
SMARTSM00320130394432IPR001680WD40 repeat
SMARTSM0032016435472IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MMAGMEVDDG STRVGSKRNY SRSGNAAGSG GGAGGRSHGQ QVCRYWQEGR CVKGDDCQWL  60
HPGNAGSTGR GNSAGSAKRS NNAHEYRDRE ARDPAGGWGY GGGGFTSGSN QGRPRNVSAR  120
WGRGGRGGRS GRGSHDQRDN RFQEGGRSHT PKQKPCSYWL KGNCMRGDTC NFLHAHTTAP  180
DMEMTTVLNG HEKAVRAIVL PEAHAQLYTG SQDESVRVWD CTTGKCTNVA PMGGDVGALI  240
FAKGWLFVGL PNEVKVINMA TLQQANLSGP KGQVHALAVT DDGLLFAGTH FNAATNQFEP  300
AASMSGHTGP VVTLMLIANR LYSGSMDSTI RVWEFATLQC VQALEGHTNV VMDLLCWDSF  360
LLSCSLDGTI KIWSVNSSGQ LELTFSHPEE ENQSDSRNIT LAGALKMCGC TDKAGKPVLL  420
CSYNDNIVRL YDLPTFTERG QLFSREEVRA LQVGLNNLVF SGDSRGDVKV WSWIDTHPEA  480
VVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-1518847111325Tako8
6g6n_A2e-1518847111325Tako8
6g6n_B2e-1518847111325Tako8
6g6n_C2e-1518847111325Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369315.10.0zinc finger CCCH domain-containing protein 17-like isoform X1
TrEMBLA0A2K1KV770.0A0A2K1KV77_PHYPA; Uncharacterized protein
STRINGPP1S204_77V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-122C3H family protein