PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_17480V3.2.p | ||||||||
Common Name | PHYPADRAFT_173640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 361aa MW: 41497.2 Da PI: 8.1792 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.5 | 2.6e-11 | 27 | 109 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W ++ev aL+++ ++ +++r++l k +We v + + ++ +r++ q k+k+++l+kryk++k ++++ ++s t++++d+ Pp3c3_17480V3.2.p 27 WIDEEVEALLDVWGDTYIHVKRENLGKRHWETVVREVnARLTHQREQPQMKNKIDSLKKRYKREKLSKGES-DRSLITWKWYDR 109 *************************************6667779*********************999985.777778999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.4E-17 | 24 | 112 | No hit | No description |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MMEYLAEGER MDGTSGLQNL GSERETWIDE EVEALLDVWG DTYIHVKREN LGKRHWETVV 60 REVNARLTHQ REQPQMKNKI DSLKKRYKRE KLSKGESDRS LITWKWYDRC DMLWGTPKRE 120 MCGIGIGPVG GVHPLQHRVE AAHAHPADVM HHQDSGRLVP FVAAMQPEVN GDHQGVNVKD 180 GAASRIGDCH EEHCPPRADQ APPSPCTRCR GNAGVEPSRE NVKRRKLGTG ITAANLAKIV 240 QGFADTCARV EQAKMEMNVA MEQRRLEFLE RMEQRRQESE DRHRERKLKM EERRLELQQK 300 LADQKLEMQE KHMERRENLK LEIMRLRLQA IGQGNKAPVM EQQAVQTCEK FSSSNITTCI 360 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10993 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371223.1 | 0.0 | trihelix transcription factor ASIL1-like | ||||
Refseq | XP_024371427.1 | 0.0 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A2K1KUW3 | 0.0 | A0A2K1KUW3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S523_3V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 3e-12 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_17480V3.2.p |
Entrez Gene | 5949014 |
Publications ? help Back to Top | |||
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