PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_17430V3.3.p

Common Name

PHYPADRAFT_173640

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 361aa MW: 41497.2 Da PI: 8.1792

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_17430V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.5	2.6e-11	27	109	2	84
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W ++ev aL+++ ++ +++r++l k +We v + + ++ +r++ q k+k+++l+kryk++k ++++ ++s t++++d+ Pp3c3_17430V3.3.p 27 WIDEEVEALLDVWGDTYIHVKRENLGKRHWETVVREVnARLTHQREQPQMKNKIDSLKKRYKREKLSKGES-DRSLITWKWYDR 109 ***********************************6667779*******************999985.777778999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.4E-17	24	112	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MMEYLAEGER MDGTSGLQNL GSERETWIDE EVEALLDVWG DTYIHVKREN LGKRHWETVV 60 REVNARLTHQ REQPQMKNKI DSLKKRYKRE KLSKGESDRS LITWKWYDRC DMLWGTPKRE 120 MCGIGIGPVG GVHPLQHRVE AAHAHPADVM HHQDSGRLVP FVAAMQPEVN GDHQGVNVKD 180 GAASRIGDCH EEHCPPRADQ APPSPCTRCR GNAGVEPSRE NVKRRKLGTG ITAANLAKIV 240 QGFADTCARV EQAKMEMNVA MEQRRLEFLE RMEQRRQESE DRHRERKLKM EERRLELQQK 300 LADQKLEMQE KHMERRENLK LEIMRLRLQA IGQGNKAPVM EQQAVQTCEK FSSSNITTCI 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MMEYLAEGER MDGTSGLQNL GSERETWIDE EVEALLDVWG DTYIHVKREN LGKRHWETVV  60
REVNARLTHQ REQPQMKNKI DSLKKRYKRE KLSKGESDRS LITWKWYDRC DMLWGTPKRE  120
MCGIGIGPVG GVHPLQHRVE AAHAHPADVM HHQDSGRLVP FVAAMQPEVN GDHQGVNVKD  180
GAASRIGDCH EEHCPPRADQ APPSPCTRCR GNAGVEPSRE NVKRRKLGTG ITAANLAKIV  240
QGFADTCARV EQAKMEMNVA MEQRRLEFLE RMEQRRQESE DRHRERKLKM EERRLELQQK  300
LADQKLEMQE KHMERRENLK LEIMRLRLQA IGQGNKAPVM EQQAVQTCEK FSSSNITTCI  360
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.10993	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371223.1	0.0	trihelix transcription factor ASIL1-like
Refseq	XP_024371427.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A2K1KUW3	0.0	A0A2K1KUW3_PHYPA; Uncharacterized protein
STRING	PP1S523_3V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	3e-12	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pp3c3_17430V3.3.p
Entrez Gene	5949014

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]