PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_17430V3.2.p | ||||||||
Common Name | PHYPADRAFT_173640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 362aa MW: 41628.4 Da PI: 8.1792 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.5 | 2.6e-11 | 28 | 110 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W ++ev aL+++ ++ +++r++l k +We v + + ++ +r++ q k+k+++l+kryk++k ++++ ++s t++++d+ Pp3c3_17430V3.2.p 28 WIDEEVEALLDVWGDTYIHVKRENLGKRHWETVVREVnARLTHQREQPQMKNKIDSLKKRYKREKLSKGES-DRSLITWKWYDR 110 *************************************6667779*********************999985.777778999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.5E-17 | 25 | 113 | No hit | No description |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MMMEYLAEGE RMDGTSGLQN LGSERETWID EEVEALLDVW GDTYIHVKRE NLGKRHWETV 60 VREVNARLTH QREQPQMKNK IDSLKKRYKR EKLSKGESDR SLITWKWYDR CDMLWGTPKR 120 EMCGIGIGPV GGVHPLQHRV EAAHAHPADV MHHQDSGRLV PFVAAMQPEV NGDHQGVNVK 180 DGAASRIGDC HEEHCPPRAD QAPPSPCTRC RGNAGVEPSR ENVKRRKLGT GITAANLAKI 240 VQGFADTCAR VEQAKMEMNV AMEQRRLEFL ERMEQRRQES EDRHRERKLK MEERRLELQQ 300 KLADQKLEMQ EKHMERRENL KLEIMRLRLQ AIGQGNKAPV MEQQAVQTCE KFSSSNITTC 360 I* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.10993 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371223.1 | 0.0 | trihelix transcription factor ASIL1-like | ||||
Refseq | XP_024371427.1 | 0.0 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A2K1KUW3 | 0.0 | A0A2K1KUW3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S523_3V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 3e-12 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_17430V3.2.p |
Entrez Gene | 5949014 |
Publications ? help Back to Top | |||
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