PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_17110V3.2.p
Common NamePHYPADRAFT_160758
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 501aa    MW: 56054.5 Da    PI: 6.1969
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_17110V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.48.7e-09237283452
                AP2   4 kGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 
                        kG r++k r +W Ae   ++  g ++ ++slg +++ +eAa+aa+a + +
  Pp3c3_17110V3.2.p 237 KGFRFRKDRLKWIAE---FNPPGkRNNKISLGEYDSLDEAARAADAGKFY 283
                        7889***********...86656577*******************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.115235294IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-8236295IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-7237295IPR001471AP2/ERF domain
PfamPF008476.5E-6237283IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MLLIGAPSPM HIGIRMDKGA GACQVVTRDL RRPPLLSSVT RNVTRRSSNA FYPDFAYRVD  60
VKRKCLQVLS VVGPTKFVQG EQVEGSSCFN KLRAEGEAKC IEEYSMKLGY RYPNTNPSTF  120
YFPAVFECVR KEEATLGEDE RIDMKPEVKW VNPFPFDTGA EALVMSLARH ASEWIAYFQR  180
NISKLHMSFS DHTKLSLVLQ LDVITCESWT TRVPKMPHDV RFGYDSMKDQ EASKRQKGFR  240
FRKDRLKWIA EFNPPGKRNN KISLGEYDSL DEAARAADAG KFYYGSKKPS YNFGDSPLLL  300
QQGPSPLAND KDAIRKWARD FAKLTTNVSS PSTSMSIGGG LPAPYETSGY DISIPMPFNS  360
TVQQQHVLSS TPMCNLLEAF PRIGVVEGDL QMQDYDSCSD LSLPDVSQHM TSRDTFNLVD  420
QECTGMIVSQ GTEQVACPEE VLFSNFPLPD VEIWSSPPLL QSPLLRTSSD GNWVSDDLFQ  480
YLSSPANPSF NSFGRLGFDV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.154400.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370073.10.0uncharacterized protein LOC112279664
RefseqXP_024370074.10.0uncharacterized protein LOC112279664
TrEMBLA0A2K1KUS60.0A0A2K1KUS6_PHYPA; Uncharacterized protein
STRINGPP1S25_372V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.17e-07ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]