PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_15040V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 583aa    MW: 64679.5 Da    PI: 6.4126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_15040V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31250308159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +dDg++WrKYGqK vk+s++pr+YYrCt+++Cpv+k+vers ed  +v++tYeg+H+h+
  Pp3c3_15040V3.3.p 250 MDDGFKWRKYGQKAVKNSPYPRNYYRCTTPQCPVRKRVERSCEDSGLVITTYEGTHTHQ 308
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-33237310IPR003657WRKY domain
SuperFamilySSF1182901.05E-28243310IPR003657WRKY domain
PROSITE profilePS5081130.836245310IPR003657WRKY domain
SMARTSM007744.2E-36250309IPR003657WRKY domain
PfamPF031061.3E-24251308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MSPNPAMNPF LVDSSSYAAE SPWMALRELE QQRTATSQSH SSHDVGVRQG CEYAKEMART  60
PSDTILHAEL ETDWFRSSDN HFGPECAASL SEDIKIGSTH PGHGNIQEAG MRHAQGEDMV  120
ESRMDRESSS PFMAVHEADG SAATQPNNVE LSQNSSLSLS GSGGDSDEEW VRNAVVSSEA  180
GERSGKRKSP NSSATGEFRE ADFDKPSSDA AELMQSKYSE SATLRRRKKN VKTLRKPIYA  240
IETRTDVDIM DDGFKWRKYG QKAVKNSPYP RNYYRCTTPQ CPVRKRVERS CEDSGLVITT  300
YEGTHTHQTP GLFSHPSAAS GHGLPESKNP LGHGFEHFQI PRSPSLLPHP TEVSALAVLQ  360
HMRIMQQLQD MSQQQIAPPD PLLAGSLQQE SLLRAQQFLG LYDHPTGAID RESFQYLPHA  420
RGSVSHAPSP YPSRPSFHPT SETILDRMHM LITPQHMRSR GTPEQSLHPA TMDLDYHGYQ  480
HQMTSSPSQC DDLVRRVLEA EEEGPVDVDV RDGSLSSDAK SDPASASSET RTATQSDFVT  540
QLQTELRNRM EKTFLPSPTP PPPKGSVRRR WSKTMRNRGC EE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-26240310474WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369755.10.0uncharacterized protein LOC112279497 isoform X1
RefseqXP_024369756.10.0uncharacterized protein LOC112279497 isoform X1
RefseqXP_024369757.10.0uncharacterized protein LOC112279497 isoform X1
RefseqXP_024369758.10.0uncharacterized protein LOC112279497 isoform X1
TrEMBLA0A2K1KUN90.0A0A2K1KUN9_PHYPA; Uncharacterized protein
STRINGPP1S25_173V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-33WRKY DNA-binding protein 57