PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_5620V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 632aa    MW: 68830 Da    PI: 4.9172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_5620V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18114163255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr++  +grWvAeIr+p     r  +r +lg+f ta eAa+a+++a++ ++g
  Pp3c2_5620V3.1.p 114 QYRGVRQRQ-WGRWVAEIREP-----RlrTRMWLGTFSTALEAARAYDEAALVYHG 163
                       6*****999.**********9.....445************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-34114177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-29114172IPR001471AP2/ERF domain
PROSITE profilePS5103222.339114171IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-20114173IPR016177DNA-binding domain
CDDcd000182.60E-29114172No hitNo description
PRINTSPR003672.2E-9115126IPR001471AP2/ERF domain
PfamPF008475.9E-12115163IPR001471AP2/ERF domain
PRINTSPR003672.2E-9137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MTEIAMGMAR QQQQQQHSAS ATSSCVPVFD KQEEDQTPLV VPEQLEAHHD HVDSNSDTNS  60
SASDVDSKTG VATADTKTRG RKKKGTAASS SSGSGNGQER VRKRRGGPEN GLHQYRGVRQ  120
RQWGRWVAEI REPRLRTRMW LGTFSTALEA ARAYDEAALV YHGPGARLNL PHETTQKSEN  180
VPQLGNQGVE YHYGHLKTNK FMGLGVPANL LIGSDVASTD KYFMSVDTSR LRQSSSCSVE  240
NIGQPAGFNL NRDPEWWISC GSFRPNSIPQ SVPNFSNVPP STSSCNVGSE RFHLSQVPIN  300
FQTIPISCKL PPDRHELVQG FPVPQQLSAG LFHSKYTQTL GLRSPNIHCE LGSDCPYADR  360
QGRGLHRNDT HNTGAVMFAK SSTTQTDSFF ESNQNEPLKV PIGDASPDMA PTFTATPHQP  420
EQPVAVLVPG ESTAMFNPPP PSDVSCQYCS NVEAPKKFEC PISEGSAENS FVTEFEKFDF  480
ESDAFQSMDS SIESQHDKLV SGVTAATAVM DHGPPVSSEA SPVSLQGADF GDEGSPSSFW  540
PDSTTSSHQS LNASESCPWS NIQEERYMLK LCPVFEDMNG CWDDAGSPIL PPPSLLDLPD  600
LPNLSFDSLT EVFCDTPKVN DVDKAANFPD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-17104178679Ethylene-responsive transcription factor ERF096
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.29301e-124protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369071.10.0uncharacterized protein LOC112279150
TrEMBLA0A2K1L0D10.0A0A2K1L0D1_PHYPA; Uncharacterized protein
STRINGPP1S7_352V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-20ERF family protein