PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_4940V3.3.p

Common Name

PHYPADRAFT_174493, Pphb7

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HD-ZIP

Protein Properties

Length: 340aa MW: 37933.2 Da PI: 4.8857

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_4940V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.6e-18	92	145	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq++ Le+ Fe ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k Pp3c2_4940V3.3.p 92 KKRRLSLEQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 145 4558999**********************************************9 PP
2	HD-ZIP_I/II	127.4	6.3e-41	91	183	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqv++LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlE+dye+Lk+ayd+lk++ e+++ ++++L++e+++ Pp3c2_4940V3.3.p 91 EKKRRLSLEQVRSLERNFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQLERDYETLKKAYDRLKADFEAVTLDTSALKAEVSR 183 69**************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.17E-20	68	149	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.556	87	147	IPR001356	Homeobox domain
SMART	SM00389	7.1E-16	90	151	IPR001356	Homeobox domain
CDD	cd00086	7.95E-17	92	148	No hit	No description
Pfam	PF00046	1.3E-15	92	145	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-19	94	154	IPR009057	Homeodomain-like
PRINTS	PR00031	6.0E-6	118	127	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	122	145	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.0E-6	127	143	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.6E-15	147	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MVVPSLPAFG GQNAMLRRNI DNNTDTLISL LQGSCSPRVS MQQVPRSSES LENMMGACGQ 60 KLPYFSSFDG PSVEEQEDVD EGIDEFAHHV EKKRRLSLEQ VRSLERNFEV ENKLEPERKM 120 QLAKELGLQP RQVAVWFQNR RARWKTKQLE RDYETLKKAY DRLKADFEAV TLDTSALKAE 180 VSRLKGISND DVKPAEFVQG KCDTTSHPAS PAQSERSDIV SSRNRTTPTI HVDPVAPEEA 240 GAHLTMSSDS NSSEVMDADS PRTSHTSASR STLSTSVVQP DEGLGVAQYP HFSPENFVGP 300 NMPEICADQS LASQVKLEEI HSFNPDQTFL LLPNWWDWA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.6505	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028078	0.0	AB028078.2 Physcomitrella patens mRNA for homeobox protein PpHB7, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024368952.1	0.0	homeobox-leucine zipper protein HOX20-like isoform X2
TrEMBL	A9RG47	0.0	A9RG47_PHYPA; Uncharacterized protein
STRING	PP1S7_280V6.4	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-43	homeobox 1

Link Out ? help Back to Top
Phytozome	Pp3c2_4940V3.3.p
Entrez Gene	5916207

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]