PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_40V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 523aa MW: 59516.4 Da PI: 9.4809

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_40V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.7	1.1e-12	377	425	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 ++W+ eE ell+++v+++G+g+Wk+I + gRt+ ++k++w+++ Pp3c2_40V3.2.p 377 KKWSNEEVELLKRGVQEHGKGHWKKILNDNTdafRGRTEVDLKDKWRNL 425 58*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.553	371	430	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-14	372	426	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.14E-15	373	428	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-8	375	428	IPR001005	SANT/Myb domain
CDD	cd11660	1.32E-19	377	427	No hit	No description
Pfam	PF00249	4.6E-10	377	425	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MERTPRGGKE LGFKLIHAWI WEYVLKHTVG VNIIQELTKL LPFPTALQYL EGLENSLASK 60 PAEELEVSMR GGLLQPALER KDLERPLLEL KSELRTLLGE KRVDAQQAKV IRDEFRTLAA 120 KAWILLGPLV LEEFAASTIA GKRSLRAQSS VRSPHPVAIP DSEDRSFHDT QETFVDRRFE 180 QLEGALRASQ SELQNILDVK IAEVKRSVVV LEDAHHSLKK LVKDQAEVCK QHVRLKNPGT 240 TSQCLGLSVL NLPPLAHALG LEDDNMYEDK DRPSSNAHCF QLSSEYPHPS NSQDPYSSPS 300 HPLLLDPGLH NTKETARALE SSWSPSKITG RVGFMHGGQR EKRPFQEIDL CGEVLICNSE 360 QTVRECKHGS TQRQTQKKWS NEEVELLKRG VQEHGKGHWK KILNDNTDAF RGRTEVDLKD 420 KWRNLEKYER LQYGTTSSLT IEPHPYLRSP AFNPPNRTQY SRIRFLTQQH RDSISISPHN 480 TLDLRLFNNR NGSQSLDSGV TSKENKTKER KEKKKEKKTN KR*

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MERTPRGGKE LGFKLIHAWI WEYVLKHTVG VNIIQELTKL LPFPTALQYL EGLENSLASK  60
PAEELEVSMR GGLLQPALER KDLERPLLEL KSELRTLLGE KRVDAQQAKV IRDEFRTLAA  120
KAWILLGPLV LEEFAASTIA GKRSLRAQSS VRSPHPVAIP DSEDRSFHDT QETFVDRRFE  180
QLEGALRASQ SELQNILDVK IAEVKRSVVV LEDAHHSLKK LVKDQAEVCK QHVRLKNPGT  240
TSQCLGLSVL NLPPLAHALG LEDDNMYEDK DRPSSNAHCF QLSSEYPHPS NSQDPYSSPS  300
HPLLLDPGLH NTKETARALE SSWSPSKITG RVGFMHGGQR EKRPFQEIDL CGEVLICNSE  360
QTVRECKHGS TQRQTQKKWS NEEVELLKRG VQEHGKGHWK KILNDNTDAF RGRTEVDLKD  420
KWRNLEKYER LQYGTTSSLT IEPHPYLRSP AFNPPNRTQY SRIRFLTQQH RDSISISPHN  480
TLDLRLFNNR NGSQSLDSGV TSKENKTKER KEKKKEKKTN KR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	509	517	RKEKKKEKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1I9J9	0.0	A0A2K1I9J9_PHYPA; Uncharacterized protein
STRING	PP1S471_2V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	2e-11	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pp3c2_40V3.2.p