PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_32160V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 535aa    MW: 58292.9 Da    PI: 5.464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_32160V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30272329259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgy+WrKYGqK+vk+s +pr+YY+Ct+a+Cpv+k+ver+++dp+ v +tY g+H+h+
  Pp3c2_32160V3.7.p 272 DDGYKWRKYGQKPVKNSVHPRNYYKCTTANCPVRKRVERCTDDPSHVLTTYDGTHTHP 329
                        8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-32258330IPR003657WRKY domain
SuperFamilySSF1182902.75E-28263329IPR003657WRKY domain
PROSITE profilePS5081128.977266331IPR003657WRKY domain
SMARTSM007749.8E-34271330IPR003657WRKY domain
PfamPF031063.0E-24272329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDPEGRGSAG SGSGQPEKDV PGVGSGTEDE GFSGGGFVSS PQRGSTSSFA DAAPSFADMD  60
STWQMLGSAE FDQPEAHAPW WDNRQQRGHV APGLDAFEGS SHFTQYQGLV RQESLNLITA  120
QIARDHEIER YSQEELRGFR DEMERFLFDQ SDSLTLPNLE PQYFGTSGTS GTNPDPLGYA  180
DTPVPEVSSL SIGPDTEVDL SDASTRDSQG ASEVSSPGSK RKLEGVSADH AGDPNYDGNS  240
PRIRQRVQSS PAGRSPQSRI AIQTRTEVDV IDDGYKWRKY GQKPVKNSVH PRNYYKCTTA  300
NCPVRKRVER CTDDPSHVLT TYDGTHTHPE TSPQTTDGSN PPRNVGCNLE RMVDEDVSTS  360
SAPVTPLGPP RVPSNYWPVQ PNGLANLLLA GSQLPDQRRW SHPAAQQIFR LQFQTQYPLL  420
FNMLNLMRTF PRARPPLVDP RMSPRLDSRA LHAAQSYAMR TASGHINQDV VGPASAKALD  480
PQNSSSGLGP SSSVPVSFSR AQQRLLWMRQ LMGESILGEQ RTGQHPASDS TTDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23261328774Probable WRKY transcription factor 4
2lex_A2e-23261328774Probable WRKY transcription factor 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367806.10.0uncharacterized protein LOC112278470 isoform X3
TrEMBLA0A2K1L3Y00.0A0A2K1L3Y0_PHYPA; Uncharacterized protein
STRINGPP1S426_30V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-31WRKY DNA-binding protein 50