PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_32160V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 331aa    MW: 36940.9 Da    PI: 10.3102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_32160V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-3168125259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgy+WrKYGqK+vk+s +pr+YY+Ct+a+Cpv+k+ver+++dp+ v +tY g+H+h+
  Pp3c2_32160V3.4.p  68 DDGYKWRKYGQKPVKNSVHPRNYYKCTTANCPVRKRVERCTDDPSHVLTTYDGTHTHP 125
                        8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-3354126IPR003657WRKY domain
SuperFamilySSF1182901.28E-2859125IPR003657WRKY domain
PROSITE profilePS5081128.97762127IPR003657WRKY domain
SMARTSM007749.8E-3467126IPR003657WRKY domain
PfamPF031061.5E-2468125IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRPPGTRRVL LKCRLPVQRG NWREFRPTML GILIMMAIPQ EFDSACNPGR SPQSRIAIQT  60
RTEVDVIDDG YKWRKYGQKP VKNSVHPRNY YKCTTANCPV RKRVERCTDD PSHVLTTYDG  120
THTHPETSPQ TTDGSNPPRN VGCNLERMVD EDVSTSSAPV TPLGPPRVPS NYWPVQPNGL  180
ANLLLAGSQL PDQRRWSHPA AQQIFRLQFQ TQYPLLFNML NLMRTFPRAR PPLVDPRMSP  240
RLDSRALHAA QSYAMRTASG HINQDVVGPA SAKALDPQNS SSGLGPSSSV PVSFSRAQQR  300
LLWMRQLMGE SILGEQRTGQ HPASDSTTDN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2457124774Probable WRKY transcription factor 4
2lex_A2e-2457124774Probable WRKY transcription factor 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024367806.10.0uncharacterized protein LOC112278470 isoform X3
RefseqXP_024367814.10.0uncharacterized protein LOC112278470 isoform X4
TrEMBLA0A2K1L3Y00.0A0A2K1L3Y0_PHYPA; Uncharacterized protein
STRINGPP1S426_30V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-32WRKY DNA-binding protein 50