PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_31770V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 25630.8 Da PI: 6.6728 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +k G g+W+t +++ g++R++k+c++rw +yl Pp3c2_31770V3.1.p 17 KGPWTEEEDAILIAFIKADGEGNWRTLPKRSGLKRCRKSCRLRWMNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eEdel+++++ +l ++ W++Ia +++ gR ++++k++w++ Pp3c2_31770V3.1.p 70 RGNFSPEEDELIIKLHSLLENR-WSLIAGRIP-GRKDNEIKNYWNS 113 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.406 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.45E-28 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-13 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-22 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.22E-10 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 21.618 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-14 | 70 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-10 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRAPCGRVQ SEEGFYKGPW TEEEDAILIA FIKADGEGNW RTLPKRSGLK RCRKSCRLRW 60 MNYLRPDLER GNFSPEEDEL IIKLHSLLEN RWSLIAGRIP GRKDNEIKNY WNSRLRRRLG 120 RMESDPICRE VVATPLSIAS LESSIKVEVE SSCSHLDTGE SSSLDSIATN LSSHFTTPEP 180 SDQEAPLSSD AHDISNFPQF TLFPSVIRQG EAITSTPSSH ETVVGRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 15 | 119 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024359849.1 | 1e-167 | myb-related protein Hv1-like isoform X1 | ||||
Swissprot | P20026 | 2e-55 | MYB1_HORVU; Myb-related protein Hv1 | ||||
TrEMBL | A0A2K1L3W4 | 1e-165 | A0A2K1L3W4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S371_6V6.1 | 1e-166 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-57 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_31770V3.1.p |